RNA id: TU159622


Basic Information

Item Value
RNA id TU159622
length 340
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G140435
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4736894 ~ 4822645 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTCACTGTACTGATTGTGTCTCTGATTATGCTTTTGTGTGTGTTGTGCTTATTAAAGAAAAGCCAAGACAAGGCAGCTCTGGACAAGATATTTAAGGATCTGGATGCAAACGCTGATGGCGCTGTGGACTTCCAGGAGTACGTCACCCTGATCGCCTGCATCACTATGCTTTGCAATGATTTTTTTACTAAAAAATAACTTTGTCCTTACAGAAAGTTTTTGTCTGTAAAGTTATGGTACATCTGGAAAAGCCAAGACAAGTCAGCTCTGGACAAGATATTTAAGGATCTGGATGCAAACGCTGATGGCGCTGTGGACTTCCAGGAGTACGTCACCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159627 lncRNA upstream 33102 4777204 ~ 4779338 (+) False CI01000027_04777135_04777760
TU159656 lncRNA upstream 75772 4733708 ~ 4736668 (+) True G140455
TU159804 lncRNA upstream 103445 4708788 ~ 4708995 (+) True G140597
TU159803 lncRNA upstream 103934 4708225 ~ 4708506 (+) True G140596
TU159794 lncRNA upstream 119736 4692134 ~ 4692704 (+) True G140587
TU159676 lncRNA downstream 2447 4824940 ~ 4825988 (+) True G140475
TU159840 lncRNA downstream 10519 4833012 ~ 4833260 (+) True G140633
TU159655 lncRNA downstream 50622 4873115 ~ 4874023 (+) True G140454
TU159847 lncRNA downstream 59587 4882080 ~ 4882366 (+) True G140640
TU159848 lncRNA downstream 60086 4882579 ~ 4882895 (+) True G140641
CI01000027_04777135_04777760.mRNA mRNA upstream 33127 4776487 ~ 4779313 (+) False CI01000027_04777135_04777760
CI01000027_04774573_04774740.mRNA mRNA upstream 37462 4774573 ~ 4774978 (+) False CI01000027_04774573_04774740
CI01000027_04768212_04770488.mRNA mRNA upstream 41753 4768212 ~ 4770687 (+) True CI01000027_04768212_04770488
CI01000027_04725469_04727486.mRNA mRNA upstream 84157 4723893 ~ 4728283 (+) True CI01000027_04725469_04727486
CI01000027_04713891_04717190.mRNA mRNA upstream 95081 4713780 ~ 4717359 (+) True CI01000027_04713891_04717190
CI01000027_04835989_04851147.mRNA mRNA downstream 13496 4835989 ~ 4851178 (+) True CI01000027_04835989_04851147
CI01000027_04860802_04872130.mRNA mRNA downstream 38309 4860802 ~ 4872566 (+) True CI01000027_04860802_04872130
CI01000027_04887494_04956477.mRNA mRNA downstream 64823 4887316 ~ 4957488 (+) True CI01000027_04887494_04956477
CI01000027_04978217_04987503.mRNA mRNA downstream 155724 4978217 ~ 4987503 (+) False CI01000027_04978217_04987503
CI01000027_05018992_05033275.mRNA mRNA downstream 195767 5018260 ~ 5034290 (+) True CI01000027_05018992_05033275
TU159641 other upstream 26780 4780417 ~ 4785660 (+) False G140440
TU159637 other upstream 28036 4780417 ~ 4784404 (+) False G140440
TU159638 other upstream 28036 4780417 ~ 4784404 (+) False G140440
TU159640 other upstream 28036 4782442 ~ 4784404 (+) True G140440
TU159630 other upstream 33102 4737398 ~ 4774262 (+) True G140436
TU159892 other downstream 226430 5048923 ~ 5055939 (+) True G140682
TU159886 other downstream 246859 5069352 ~ 5070868 (+) True CI01000027_05069310_05070638
TU159891 other downstream 249569 5072377 ~ 5072419 (+) True G140681
TU160081 other downstream 890119 5712612 ~ 5712702 (+) True G140862
TU160140 other downstream 934489 5757776 ~ 5757799 (+) True G140921

Expression Profile