RNA id: TU159641


Basic Information

Item Value
RNA id TU159641
length 2340
RNA type TUCP
GC content 0.34
exon number 3
gene id G140440
representative False

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4780417 ~ 4785660 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAAAGTGAAGCTGTGAGGGATAGACAGACATTTCTTCAGTGGGTTGTTCTGTTATTTAATGTGTTTTTGGATTGTTTTGCTTACGAATCACACAACATGAGCTATGTAAAATTATAAGTGATCTAGGAGCGTACAGCTTTTACCCTGGATGCCTTTGAAAACACGACATGTCTAAGCTGGAGAAAGCCATTGTGGCCATAGTGGAGGTGTTTGAGGAGTATGCAGGAACAGATGAACAAAAGTCCCAGCTCAGTAATGCTGAACTCGGACAGCTTATTAAAGCCCAACTGACCAGTCCTGAATTTAAGGATAAAGTGGATCCAGAGAATATTAAGGAGGTCATGGAAGAACTGGATAAGAACCATGATGGAGAAGTGAACTTCCGTGAATTCAGTCAGTGTATTGCTGGTCTTGCCAGGGCCTACTATATGAAAAAGCACGGCAAGGAAAAGTGTAGGGGAAGGGGCAGAGGGTGTCAGGATAAGTGAACACACACGTCCTTCACACACTCTCCTCACATGCCTCTTATAAGGTCCCAAAGTACAGTTAAACCAAAATTTATTCAGACACCTTGAACATTTCATTTATTAATACAGTTTATTCACTATAGTTTAAAAAAATGGTAATAAAATATGACAAGATCTCGGAGTTAAACTTTGTCAGAAAAAAAATTATCTTAATTATGTCAGCTAACACTTAAGCAAAACATGGTCAGGTCAAAGTGTCTGAATAATTTTTGGTTCCAAATTTGTATAAATTTTACTGGTAGTCCACTGTATGAAGAATTTTTGGGTATAATATGTCACAGTTTACTTTATTTTGCTATCCTCACTTACATAAATGAACTATAGTGTCCTGCACACTAGTAAAAATATATCAGAAATGTAATTTTTGGTTTGACTGTACCTCTCAGTGTCTCACACTGTTCTCTATAATGTTGCCAACAATTTTATATGCTTTAAGACAGTATGACACAGTAAAAATGGTATTGTGCAAAATGTTTGTCTTTTTTAACAAACAGTATTTACTTTACAGACGTTTTGCAAAAGTGTAATTTATAGTTCTGTGGACACTAATAAAACCCTCTTGTGATCACTCATGTGTACCTCTCACTTTTTTCTTTTCATTTAGTTTTTATATGACAATTTATACCAATTATTGCATTTATTATATCATGAAGGCTAATTATTTTAAAATTTGTTCAAAATAAATTTATTTAAATCAATGAGTGCATGTTGTGTTTCAATATATTATTTTGTGTGTGTTATAAAATATAATTCTATTATTTACATTATATCACATTTTGAGGGTAATACACATTTATATAAAATATTTATATCAGTGATTGCATGTTATGCTACTTTATTATATCACATAAATATGTGAAAAATAAAAATATATATATATAGGTTACTTGGGACACTTTTTGCCATTAAAGGATTAGTTCACTTTTAAATGAAAATTACCCCAAGCTTTACTCACCCTCAAGCCATCCTAGCTGTATATGACTTTCTTTTTTCTGATGAACACAATCAGAGATTTACTAATAAATATTAATAAATATCCTGATGCATCCAAGCCTTATAATTGCAGTGAGCGATACCAAAGAGTATGAGCTGAAGAAAGTGCTTCCATCCACATCCATCATGTACTTCACACGGGGGGTTAATAAAGTCCTTCTGAAGTGAAGCGATGCATTTGTATATAAAAAAAAATATCCATATTTAACAAGTTATGAAGTAAAATATCTAGCTTCTGCCAGACCGCCTTCCGTATTCAACTCACAAAGAAAGTGTCGCGTCAGTTAAGCATTTTCCGTAAGTTGAACAGGGAAGGCGAATGACGTAGTGCAAACTTTTTGAACTGCGAGAGTTTTACACTTTCTTCACACGGCTCCCCCCAGGAGAAAAATATGGATTTTTTTTTTTTTTTTTTTTACACAAATGCATCGCTTCACATCAGAAGGACTTTATTAACCCCCCGGTGTTTCCAGCCACATCCATCCATCGTAAACAAGGCTGTGTTCATCAGAAAGAAGAAAGTAATTTAGATCAAGTTATTAACCTTTATTTAGGCTTGATAGCGCTTTATACAGTACAGATTTTTTCAAAGCATCTTTACGGGGATAAACAGAAAAATAATGATTCAATGATGCAAACAGAGTTCAATTCTGCTGTAAAGCAGCTCTAAAAATGTTGTCATCGTCCAGCTCAGTTCAGTTCTCATCCAATCAGTGCATCCAAGTAAATAATATTGCTGAATATTAAGTTTCCCCTACTAAGTAAGCCAAAGGTGACAGTGGCAAGAAACCCAAACTCCCATCAGTGACAGAAATAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159627 lncRNA upstream 1079 4777204 ~ 4779338 (+) False CI01000027_04777135_04777760
TU159656 lncRNA upstream 43749 4733708 ~ 4736668 (+) True G140455
TU159804 lncRNA upstream 71422 4708788 ~ 4708995 (+) True G140597
TU159803 lncRNA upstream 71911 4708225 ~ 4708506 (+) True G140596
TU159794 lncRNA upstream 87713 4692134 ~ 4692704 (+) True G140587
TU159623 lncRNA downstream 26756 4812416 ~ 4822645 (+) False G140435
TU159624 lncRNA downstream 26756 4812416 ~ 4822493 (+) False G140435
TU159622 lncRNA downstream 26780 4812440 ~ 4822493 (+) True G140435
TU159676 lncRNA downstream 39280 4824940 ~ 4825988 (+) True G140475
TU159840 lncRNA downstream 47352 4833012 ~ 4833260 (+) True G140633
CI01000027_04777135_04777760.mRNA mRNA upstream 1104 4776487 ~ 4779313 (+) False CI01000027_04777135_04777760
CI01000027_04774573_04774740.mRNA mRNA upstream 5439 4774573 ~ 4774978 (+) False CI01000027_04774573_04774740
CI01000027_04768212_04770488.mRNA mRNA upstream 9730 4768212 ~ 4770687 (+) True CI01000027_04768212_04770488
CI01000027_04725469_04727486.mRNA mRNA upstream 52134 4723893 ~ 4728283 (+) True CI01000027_04725469_04727486
CI01000027_04713891_04717190.mRNA mRNA upstream 63058 4713780 ~ 4717359 (+) True CI01000027_04713891_04717190
CI01000027_04835989_04851147.mRNA mRNA downstream 50329 4835989 ~ 4851178 (+) True CI01000027_04835989_04851147
CI01000027_04860802_04872130.mRNA mRNA downstream 75142 4860802 ~ 4872566 (+) True CI01000027_04860802_04872130
CI01000027_04887494_04956477.mRNA mRNA downstream 101656 4887316 ~ 4957488 (+) True CI01000027_04887494_04956477
CI01000027_04978217_04987503.mRNA mRNA downstream 192557 4978217 ~ 4987503 (+) False CI01000027_04978217_04987503
CI01000027_05018992_05033275.mRNA mRNA downstream 232600 5018260 ~ 5034290 (+) True CI01000027_05018992_05033275
TU159628 other upstream 1079 4737398 ~ 4774262 (+) False G140436
TU159630 other upstream 1079 4737398 ~ 4774262 (+) True G140436
TU159629 other upstream 4928 4737398 ~ 4774262 (+) False G140436
TU157886 other upstream 1260352 3502072 ~ 3520065 (+) True G138953
TU157841 other upstream 1293770 3484387 ~ 3486647 (+) True G138915
TU159892 other downstream 263263 5048923 ~ 5055939 (+) True G140682
TU159886 other downstream 283692 5069352 ~ 5070868 (+) True CI01000027_05069310_05070638
TU159891 other downstream 286402 5072377 ~ 5072419 (+) True G140681
TU160081 other downstream 926952 5712612 ~ 5712702 (+) True G140862
TU160140 other downstream 971322 5757776 ~ 5757799 (+) True G140921

Expression Profile