RNA id: TU159840


Basic Information

Item Value
RNA id TU159840
length 249
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G140633
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4833012 ~ 4833260 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATGGATGGTTATGTTCCTTTATGAGATTTCAGTGACAGCCTGTTTTGTTCCATTACGACATTTCAAAGATGGTCGATTTCGTTCCATTATGAGATCGCAATGATTGTCGGTTTTGTTCCTTTGTTCCTTTACAAGATTTCAAAGATGGTTGGTTTTGTTTCATTGCGAAATTTCAATGATGGTTGGTTTTGTTCCTTTACTAGATCTCAATGACAGTCAGTTTTGTTCCTTTACAAGATCTCAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159676 lncRNA upstream 7024 4824940 ~ 4825988 (+) True G140475
TU159623 lncRNA upstream 10367 4812416 ~ 4822645 (+) False G140435
TU159624 lncRNA upstream 10519 4812416 ~ 4822493 (+) False G140435
TU159622 lncRNA upstream 10519 4812440 ~ 4822493 (+) True G140435
TU159625 lncRNA upstream 20213 4736894 ~ 4812799 (+) False G140435
TU159655 lncRNA downstream 39855 4873115 ~ 4874023 (+) True G140454
TU159847 lncRNA downstream 48820 4882080 ~ 4882366 (+) True G140640
TU159848 lncRNA downstream 49319 4882579 ~ 4882895 (+) True G140641
TU159849 lncRNA downstream 50149 4883409 ~ 4883610 (+) True G140642
TU159850 lncRNA downstream 50425 4883685 ~ 4883910 (+) True G140643
CI01000027_04777135_04777760.mRNA mRNA upstream 53699 4776487 ~ 4779313 (+) False CI01000027_04777135_04777760
CI01000027_04774573_04774740.mRNA mRNA upstream 58034 4774573 ~ 4774978 (+) False CI01000027_04774573_04774740
CI01000027_04768212_04770488.mRNA mRNA upstream 62325 4768212 ~ 4770687 (+) True CI01000027_04768212_04770488
CI01000027_04725469_04727486.mRNA mRNA upstream 104729 4723893 ~ 4728283 (+) True CI01000027_04725469_04727486
CI01000027_04713891_04717190.mRNA mRNA upstream 115653 4713780 ~ 4717359 (+) True CI01000027_04713891_04717190
CI01000027_04835989_04851147.mRNA mRNA downstream 2729 4835989 ~ 4851178 (+) True CI01000027_04835989_04851147
CI01000027_04860802_04872130.mRNA mRNA downstream 27542 4860802 ~ 4872566 (+) True CI01000027_04860802_04872130
CI01000027_04887494_04956477.mRNA mRNA downstream 54056 4887316 ~ 4957488 (+) True CI01000027_04887494_04956477
CI01000027_04978217_04987503.mRNA mRNA downstream 144957 4978217 ~ 4987503 (+) False CI01000027_04978217_04987503
CI01000027_05018992_05033275.mRNA mRNA downstream 185000 5018260 ~ 5034290 (+) True CI01000027_05018992_05033275
TU159641 other upstream 47352 4780417 ~ 4785660 (+) False G140440
TU159637 other upstream 48608 4780417 ~ 4784404 (+) False G140440
TU159638 other upstream 48608 4780417 ~ 4784404 (+) False G140440
TU159640 other upstream 48608 4782442 ~ 4784404 (+) True G140440
TU159630 other upstream 53674 4737398 ~ 4774262 (+) True G140436
TU159892 other downstream 215663 5048923 ~ 5055939 (+) True G140682
TU159886 other downstream 236092 5069352 ~ 5070868 (+) True CI01000027_05069310_05070638
TU159891 other downstream 238802 5072377 ~ 5072419 (+) True G140681
TU160081 other downstream 879352 5712612 ~ 5712702 (+) True G140862
TU160140 other downstream 923722 5757776 ~ 5757799 (+) True G140921

Expression Profile