Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU159655 |
| length | 909 |
| lncRNA type | inter_gene |
| GC content | 0.33 |
| exon number | 1 |
| gene id | G140454 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 4873115 ~ 4874023 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU159840 | lncRNA | upstream | 39855 | 4833012 ~ 4833260 (+) | True | G140633 |
| TU159676 | lncRNA | upstream | 47127 | 4824940 ~ 4825988 (+) | True | G140475 |
| TU159623 | lncRNA | upstream | 50470 | 4812416 ~ 4822645 (+) | False | G140435 |
| TU159624 | lncRNA | upstream | 50622 | 4812416 ~ 4822493 (+) | False | G140435 |
| TU159622 | lncRNA | upstream | 50622 | 4812440 ~ 4822493 (+) | True | G140435 |
| TU159847 | lncRNA | downstream | 8057 | 4882080 ~ 4882366 (+) | True | G140640 |
| TU159848 | lncRNA | downstream | 8556 | 4882579 ~ 4882895 (+) | True | G140641 |
| TU159849 | lncRNA | downstream | 9386 | 4883409 ~ 4883610 (+) | True | G140642 |
| TU159850 | lncRNA | downstream | 9662 | 4883685 ~ 4883910 (+) | True | G140643 |
| TU159852 | lncRNA | downstream | 11596 | 4885619 ~ 4885818 (+) | True | G140645 |
| CI01000027_04860802_04872130.mRNA | mRNA | upstream | 549 | 4860802 ~ 4872566 (+) | True | CI01000027_04860802_04872130 |
| CI01000027_04835989_04851147.mRNA | mRNA | upstream | 21937 | 4835989 ~ 4851178 (+) | True | CI01000027_04835989_04851147 |
| CI01000027_04777135_04777760.mRNA | mRNA | upstream | 93802 | 4776487 ~ 4779313 (+) | False | CI01000027_04777135_04777760 |
| CI01000027_04774573_04774740.mRNA | mRNA | upstream | 98137 | 4774573 ~ 4774978 (+) | False | CI01000027_04774573_04774740 |
| CI01000027_04768212_04770488.mRNA | mRNA | upstream | 102428 | 4768212 ~ 4770687 (+) | True | CI01000027_04768212_04770488 |
| CI01000027_04887494_04956477.mRNA | mRNA | downstream | 13293 | 4887316 ~ 4957488 (+) | True | CI01000027_04887494_04956477 |
| CI01000027_04978217_04987503.mRNA | mRNA | downstream | 104194 | 4978217 ~ 4987503 (+) | False | CI01000027_04978217_04987503 |
| CI01000027_05018992_05033275.mRNA | mRNA | downstream | 144237 | 5018260 ~ 5034290 (+) | True | CI01000027_05018992_05033275 |
| CI01000027_05050310_05055447.mRNA | mRNA | downstream | 176287 | 5050310 ~ 5055755 (+) | False | CI01000027_05050310_05055447 |
| CI01000027_05061061_05063086.mRNA | mRNA | downstream | 185716 | 5059739 ~ 5063414 (+) | True | CI01000027_05061061_05063086 |
| TU159641 | other | upstream | 87455 | 4780417 ~ 4785660 (+) | False | G140440 |
| TU159637 | other | upstream | 88711 | 4780417 ~ 4784404 (+) | False | G140440 |
| TU159638 | other | upstream | 88711 | 4780417 ~ 4784404 (+) | False | G140440 |
| TU159640 | other | upstream | 88711 | 4782442 ~ 4784404 (+) | True | G140440 |
| TU159630 | other | upstream | 93777 | 4737398 ~ 4774262 (+) | True | G140436 |
| TU159892 | other | downstream | 174900 | 5048923 ~ 5055939 (+) | True | G140682 |
| TU159886 | other | downstream | 195329 | 5069352 ~ 5070868 (+) | True | CI01000027_05069310_05070638 |
| TU159891 | other | downstream | 198039 | 5072377 ~ 5072419 (+) | True | G140681 |
| TU160081 | other | downstream | 838589 | 5712612 ~ 5712702 (+) | True | G140862 |
| TU160140 | other | downstream | 882959 | 5757776 ~ 5757799 (+) | True | G140921 |
