RNA id: TU159883


Basic Information

Item Value
RNA id TU159883
length 247
lncRNA type intronic
GC content 0.47
exon number 1
gene id G140674
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5039241 ~ 5039487 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCACAGTCAACGCAGCCATCTACCAGGAAATTTTAGAGCACTTCATGCTTCCTTCTGCTGACAAGCTTTATGGAGATGCTGATTTCATTTTCCAGCAGGATTTGGCACCTGCCCACACTGCCAAAGGTACCAAAAGCTGGTTCAATGACCATGGTGTTACTGTGCTTGATTGGCCAGCAAACTCGCCTGACCTGAATCCTATAGAGAATCTATGGGGTATTGTCAAGAGGAAGATGAGAGACACCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159881 lncRNA upstream 443 5038545 ~ 5038798 (+) True G140672
TU159632 lncRNA upstream 47694 4975727 ~ 4991547 (+) True G140437
TU159877 lncRNA upstream 52318 4986181 ~ 4986923 (+) True CI01000027_04978217_04987503
TU159852 lncRNA upstream 153423 4885619 ~ 4885818 (+) True G140645
TU159850 lncRNA upstream 155331 4883685 ~ 4883910 (+) True G140643
TU159893 lncRNA downstream 62904 5102391 ~ 5108232 (+) True G140683
TU159895 lncRNA downstream 70332 5109819 ~ 5114502 (+) True G140685
TU159894 lncRNA downstream 78981 5118468 ~ 5164862 (+) True G140684
TU159890 lncRNA downstream 158139 5197626 ~ 5201086 (+) True G140680
TU159946 lncRNA downstream 163709 5203196 ~ 5203505 (+) True G140734
CI01000027_05018992_05033275.mRNA mRNA upstream 4951 5018260 ~ 5034290 (+) True CI01000027_05018992_05033275
CI01000027_04978217_04987503.mRNA mRNA upstream 51738 4978217 ~ 4987503 (+) False CI01000027_04978217_04987503
CI01000027_04887494_04956477.mRNA mRNA upstream 81753 4887316 ~ 4957488 (+) True CI01000027_04887494_04956477
CI01000027_04860802_04872130.mRNA mRNA upstream 166675 4860802 ~ 4872566 (+) True CI01000027_04860802_04872130
CI01000027_04835989_04851147.mRNA mRNA upstream 188063 4835989 ~ 4851178 (+) True CI01000027_04835989_04851147
CI01000027_05050310_05055447.mRNA mRNA downstream 10823 5050310 ~ 5055755 (+) False CI01000027_05050310_05055447
CI01000027_05061061_05063086.mRNA mRNA downstream 20252 5059739 ~ 5063414 (+) True CI01000027_05061061_05063086
CI01000027_05069310_05070638.mRNA mRNA downstream 28430 5067917 ~ 5070652 (+) False CI01000027_05069310_05070638
CI01000027_05071693_05072917.mRNA mRNA downstream 32206 5071693 ~ 5073112 (+) False CI01000027_05071693_05072917
CI01000027_05074328_05075547.mRNA mRNA downstream 34841 5074328 ~ 5075740 (+) True CI01000027_05074328_05075547
TU159641 other upstream 253581 4780417 ~ 4785660 (+) False G140440
TU159637 other upstream 254837 4780417 ~ 4784404 (+) False G140440
TU159638 other upstream 254837 4780417 ~ 4784404 (+) False G140440
TU159640 other upstream 254837 4782442 ~ 4784404 (+) True G140440
TU159630 other upstream 259903 4737398 ~ 4774262 (+) True G140436
TU159892 other downstream 9436 5048923 ~ 5055939 (+) True G140682
TU159886 other downstream 29865 5069352 ~ 5070868 (+) True CI01000027_05069310_05070638
TU159891 other downstream 32575 5072377 ~ 5072419 (+) True G140681
TU160081 other downstream 673125 5712612 ~ 5712702 (+) True G140862
TU160140 other downstream 717495 5757776 ~ 5757799 (+) True G140921

Expression Profile