RNA id: TU159946


Basic Information

Item Value
RNA id TU159946
length 310
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G140734
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5203196 ~ 5203505 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAAAAAAATCAATTTTTAGCAAGTTATGAAGTAAAATATCTAGCTTCCGCCAGACTGCCTTCCATATCCAAATTACAGAAAAAAACAGAACTGGCGTTGCGTCAGTTAAGCTTTTTCCATAAGTTGAATAGGGAAGGTGTAGGACGTCGTGTAAGCGTTTTGAACTGCGAGAGTTTTACACTTTCTTCGTAAGTTGAATATGGAAGGCAGTCTGGCGGAAGCTAAATATTTATGGATATTTTTTTTACACAAACACATCGCTTCACTTCAGAAGGCCTTTATTAACCTCGCAGAGCCGTGTTTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159890 lncRNA upstream 2110 5197626 ~ 5201086 (+) True G140680
TU159894 lncRNA upstream 38334 5118468 ~ 5164862 (+) True G140684
TU159895 lncRNA upstream 88694 5109819 ~ 5114502 (+) True G140685
TU159893 lncRNA upstream 94964 5102391 ~ 5108232 (+) True G140683
TU159883 lncRNA upstream 163709 5039241 ~ 5039487 (+) True G140674
TU159962 lncRNA downstream 20122 5223627 ~ 5239327 (+) True G140748
TU160056 lncRNA downstream 163529 5367034 ~ 5367304 (+) True G140837
TU160057 lncRNA downstream 163878 5367383 ~ 5367631 (+) True G140838
TU159952 lncRNA downstream 167256 5370761 ~ 5376536 (+) False G140739
TU159953 lncRNA downstream 167256 5370761 ~ 5376536 (+) True G140739
CI01000027_05157946_05159188.mRNA mRNA upstream 43950 5156133 ~ 5159246 (+) True CI01000027_05157946_05159188
CI01000027_05082223_05082843.mRNA mRNA upstream 120003 5081616 ~ 5083193 (+) True CI01000027_05082223_05082843
CI01000027_05074328_05075547.mRNA mRNA upstream 127456 5074328 ~ 5075740 (+) True CI01000027_05074328_05075547
CI01000027_05071693_05072917.mRNA mRNA upstream 130084 5071693 ~ 5073112 (+) False CI01000027_05071693_05072917
CI01000027_05069310_05070638.mRNA mRNA upstream 132544 5067917 ~ 5070652 (+) False CI01000027_05069310_05070638
CI01000027_05205628_05209568.mRNA mRNA downstream 1582 5205087 ~ 5210170 (+) True CI01000027_05205628_05209568
CI01000027_05272101_05283619.mRNA mRNA downstream 66826 5270331 ~ 5283941 (+) True CI01000027_05272101_05283619
CI01000027_05398796_05408689.mRNA mRNA downstream 194903 5398408 ~ 5410067 (+) True CI01000027_05398796_05408689
CI01000027_05444238_05445884.mRNA mRNA downstream 240378 5443883 ~ 5446211 (+) True CI01000027_05444238_05445884
CI01000027_05461577_05471900.mRNA mRNA downstream 256088 5459593 ~ 5472892 (+) True CI01000027_05461577_05471900
TU159891 other upstream 130060 5072377 ~ 5072419 (+) True G140681
TU159886 other upstream 132328 5069352 ~ 5070868 (+) True CI01000027_05069310_05070638
TU159892 other upstream 147257 5048923 ~ 5055939 (+) True G140682
TU159641 other upstream 417536 4780417 ~ 4785660 (+) False G140440
TU160081 other downstream 509107 5712612 ~ 5712702 (+) True G140862
TU160140 other downstream 553477 5757776 ~ 5757799 (+) True G140921
TU160143 other downstream 759701 5963206 ~ 5965326 (+) True G140924
TU160291 other downstream 1067862 6271367 ~ 6271600 (+) True G141052
TU160305 other downstream 1502872 6707174 ~ 6710632 (+) True G141061

Expression Profile