RNA id: TU160397


Basic Information

Item Value
RNA id TU160397
length 216
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G141147
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6536377 ~ 6536592 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATAGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCGATCCTCGCTGGGGCCTGTAGGGGAAAGTTTTTGAATGTGACCTGTTCTTAAAATTACCCTGAATTGACACACTGTAGTGACTGTAGATGGACATGAACCTTCACAGAGGAAAGAAAACTGGGAGTCACAGATTGTGAGACCAGGTCCTGGTCTTCCATACAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160396 lncRNA upstream 2054 6534084 ~ 6534323 (+) True G141146
TU160395 lncRNA upstream 5559 6530592 ~ 6530818 (+) True G141145
TU160388 lncRNA upstream 42977 6493154 ~ 6493400 (+) True G141138
TU160341 lncRNA upstream 80011 6453119 ~ 6456366 (+) True G141097
TU160356 lncRNA upstream 84848 6451137 ~ 6451529 (+) True G141112
TU160344 lncRNA downstream 22734 6559326 ~ 6570698 (+) True G141100
TU160350 lncRNA downstream 127423 6664015 ~ 6666990 (+) True G141106
TU160355 lncRNA downstream 143240 6679832 ~ 6680388 (+) True G141111
TU160410 lncRNA downstream 157686 6694278 ~ 6694549 (+) True G141160
TU160416 lncRNA downstream 184912 6721504 ~ 6721759 (+) True G141166
CI01000027_06504915_06514535.mRNA mRNA upstream 21227 6504311 ~ 6515150 (+) True CI01000027_06504915_06514535
CI01000027_06495825_06497691.mRNA mRNA upstream 38299 6495351 ~ 6498078 (+) True CI01000027_06495825_06497691
CI01000027_06477695_06489968.mRNA mRNA upstream 46344 6477695 ~ 6490033 (+) True CI01000027_06477695_06489968
CI01000027_06470650_06470837.mRNA mRNA upstream 65389 6470650 ~ 6470988 (+) True CI01000027_06470650_06470837
CI01000027_06458587_06470747.mRNA mRNA upstream 65630 6458587 ~ 6470747 (+) True CI01000027_06458587_06470747
CI01000027_06604099_06652019.mRNA mRNA downstream 67507 6604099 ~ 6652188 (+) False CI01000027_06604099_06652019
CI01000027_06706050_06708485.mRNA mRNA downstream 169391 6705983 ~ 6708513 (+) False CI01000027_06706050_06708485
CI01000027_06785671_06803146.mRNA mRNA downstream 249079 6785671 ~ 6803213 (+) True CI01000027_06785671_06803146
CI01000027_06811768_06817052.mRNA mRNA downstream 274502 6811094 ~ 6817163 (+) True CI01000027_06811768_06817052
CI01000027_06859191_06877582.mRNA mRNA downstream 322599 6859191 ~ 6877625 (+) True CI01000027_06859191_06877582
TU160291 other upstream 264777 6271367 ~ 6271600 (+) True G141052
TU160143 other upstream 571051 5963206 ~ 5965326 (+) True G140924
TU160140 other upstream 777507 5757776 ~ 5757799 (+) True G140921
TU160081 other upstream 815612 5712612 ~ 5712702 (+) True G140862
TU159891 other upstream 1463241 5072377 ~ 5072419 (+) True G140681
TU160305 other downstream 169785 6707174 ~ 6710632 (+) True G141061
TU160326 other downstream 361819 6898411 ~ 6900923 (+) True G141082
TU160307 other downstream 416354 6952946 ~ 6957767 (+) True CI01000027_06951132_06956691
TU160585 other downstream 932152 7468744 ~ 7468892 (+) True G141315
TU161924 other downstream 1414111 7950703 ~ 7951942 (+) True CI01000027_07947743_07951397

Expression Profile