Item | Value |
---|---|
RNA id | TU160354 |
length | 3639 |
lncRNA type | antisense_over |
GC content | 0.35 |
exon number | 1 |
gene id | G141110 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000027 |
NCBI id | null |
chromosome length | 10680226 |
location | 7187529 ~ 7191167 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU160340 | lncRNA | upstream | 207058 | 6978723 ~ 6980471 (+) | True | G141096 |
TU160475 | lncRNA | upstream | 214045 | 6973260 ~ 6973484 (+) | True | G141221 |
TU160474 | lncRNA | upstream | 215198 | 6972116 ~ 6972331 (+) | True | G141220 |
TU160333 | lncRNA | upstream | 272345 | 6912496 ~ 6915184 (+) | True | G141089 |
TU160465 | lncRNA | upstream | 308180 | 6879005 ~ 6879349 (+) | True | G141211 |
TU160508 | lncRNA | downstream | 2258 | 7193425 ~ 7193627 (+) | True | G141254 |
TU160509 | lncRNA | downstream | 4108 | 7195275 ~ 7195494 (+) | True | G141255 |
TU160594 | lncRNA | downstream | 114517 | 7305684 ~ 7329095 (+) | False | G141321 |
TU160593 | lncRNA | downstream | 135834 | 7327001 ~ 7329095 (+) | True | G141321 |
TU160627 | lncRNA | downstream | 142255 | 7333422 ~ 7333632 (+) | True | G141354 |
CI01000027_07142789_07157141.mRNA | mRNA | upstream | 29542 | 7142315 ~ 7157987 (+) | True | CI01000027_07142789_07157141 |
CI01000027_07055665_07057014.mRNA | mRNA | upstream | 130275 | 7055117 ~ 7057254 (+) | True | CI01000027_07055665_07057014 |
CI01000027_06951132_06956691.mRNA | mRNA | upstream | 230687 | 6951132 ~ 6956842 (+) | False | CI01000027_06951132_06956691 |
CI01000027_06947553_06950983.mRNA | mRNA | upstream | 236546 | 6946261 ~ 6950983 (+) | True | CI01000027_06947553_06950983 |
CI01000027_06915303_06927001.mRNA | mRNA | upstream | 260221 | 6915303 ~ 6927308 (+) | True | CI01000027_06915303_06927001 |
CI01000027_07216718_07225808.mRNA | mRNA | downstream | 24601 | 7215768 ~ 7226571 (+) | True | CI01000027_07216718_07225808 |
CI01000027_07292677_07331000.mRNA | mRNA | downstream | 101510 | 7292677 ~ 7331032 (+) | True | CI01000027_07292677_07331000 |
CI01000027_07375781_07378401.mRNA | mRNA | downstream | 184614 | 7375781 ~ 7378421 (+) | True | CI01000027_07375781_07378401 |
CI01000027_07432479_07451012.mRNA | mRNA | downstream | 241312 | 7432479 ~ 7452012 (+) | True | CI01000027_07432479_07451012 |
CI01000027_07455850_07459062.mRNA | mRNA | downstream | 264683 | 7455850 ~ 7459062 (+) | True | CI01000027_07455850_07459062 |
TU160307 | other | upstream | 229762 | 6952946 ~ 6957767 (+) | True | CI01000027_06951132_06956691 |
TU160326 | other | upstream | 286606 | 6898411 ~ 6900923 (+) | True | G141082 |
TU160305 | other | upstream | 476897 | 6707174 ~ 6710632 (+) | True | G141061 |
TU160291 | other | upstream | 915929 | 6271367 ~ 6271600 (+) | True | G141052 |
TU160143 | other | upstream | 1222203 | 5963206 ~ 5965326 (+) | True | G140924 |
TU160585 | other | downstream | 277577 | 7468744 ~ 7468892 (+) | True | G141315 |
TU161924 | other | downstream | 759536 | 7950703 ~ 7951942 (+) | True | CI01000027_07947743_07951397 |
TU161938 | other | downstream | 835230 | 8026397 ~ 8032041 (+) | True | CI01000027_08026500_08029412 |
TU161951 | other | downstream | 1067170 | 8258337 ~ 8258629 (+) | True | G142511 |
TU162507 | other | downstream | 2537648 | 9728815 ~ 9729551 (+) | True | G143033 |