RNA id: TU160354



Basic Information


Item Value
RNA id TU160354
length 3639
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id G141110
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7187529 ~ 7191167 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAAGTTTCTTTCGCACAATTGTGTCTCCAAAACAGAGACACTATGTTCCGAATAACTGCATGAATAATAATATAATGCACAAGGCCACTCAGACATGTTTTTTGTTTCTGTTGAACACTTTATTTCAGAGAATGATTGCACATTTTGGACCTTACTTTTTTTTTTTTTAAATAGCATTCATGTGGATTTATATATAATTCATGGTATCATTAACAGTTAGAAATATTTAAGTTTCTTTACTGGAGGCTGCAGTCAGTATCCTTTATACTCATATATGTCTTTAATTCCATTCCAAATAAAACGTAGATTTTTACACCCAAACAGAAAATGAAGAAAATCTTGTCTGATACTTATTAGGACAACATAATACCATTAAACTGACAATTAATAGGTATAATCTGCTTAAAGCTAGCAGATTTCAACAGATATAGCCACAATGTGTTTCATTCACATTCAGAGCAGATGCCAGGGTATTTTAAGCATATATTTCTTTGCAATACACGGACATGACACAAAGTGAATATTGAGTAAATAAGTAGACACAATAATATGCAATGAATGCTGACAATTCTGAAAATGCATAAACAACCACGTTAGTATGATCTACCAGCCATACAGCGATGAAGCAGTTGGCCAAATATTATCAAATGACAGAAGAATTTACACTAAAGTACTATAAAGTTTGATTAGAAGAACAGCATTTGACTTTATAATAATTTGAAAAGATACAGAAGGCATACATTGATTTCATGACCACTTAGTGCCGCCATACATGATTATGGTATTAAACATGCCCTGCCCTCTCACGGCTTTCCCATCTTAAACAATCCCTCGTAATTCCAGTCCCCTGTAAAAGGAGCCTCAATTAATTATACAGTCTTAGTTGGCCTGAGTAAAGTTGAAAACATGAATTATTCATGTGTAATTTCTTGAAACACTGTGTGTGAGGGAGAGAATGGATACAGTTTGAAGGGCCAACTCAGTGTAGCAAGACCAACTCCGTCATCTTTTGAGGCTTCATTCAGTCTCATTCTGTAACCTCGCTTTGTTCTCCTTTCACAGCTTTCATCCTCTTCCTTGACATTTCTCAGCTTTGCCCTTTTCAGTTTCTTCATTTTTCGAACTTTTCCTTGTCATCGTTTCTGTTACCTCTCTGTTCATCCTTTAGCATGAGTAACCTGCTAAAAATATCTGTAACCTGTCCTTTTTGTTTTATCAGATACATTATGATTAAAAGAAAATTAGGCCATTCTGAGGCTAGCCGGGATAGTTACAGTACAGAAAATGCATACACTTTGATATGACCTTTGACAAAAGGTGAATTTTGAAAAATCACATCTTTTTCCATATTATGTCAGCTTATAGTAAACAAAAGTAAAAAAAAAAAAAAAAAAAAAAACAGCATAAAATTAGTCCATACTACTATTTTAAAGTCTTCTAAAGCAATACCTTTGTGTGATGAAATGACTAAAATTAAAGTCATTATTCACTACGCATTCAGGTTTGAAATGGCAAATGACAGGATTTTCATTTTAGGTGAACTTGTAACACATTTGGCCTACTAAGTTCAATAAATCAAATGTCACTTTACAGTTCAAAAAACTCTGTGTTTAAATACAAAAGCAAATCAATTTAACTTCTATTGATTTAAGAAAAAACAGAAACCAACATTTGTTGAATAGCTATCAAATATAGGCTATTATTAAATTCAATATCAAAAACAACAAAATACAAAACATATTTTAAGGTCAGAAATACTAATGAAGATGGATAGAGTTGTACTTGAGCAAAAAATATACCCCAGAGCGAAAATAGCCACTTCAAGTAGTTTAGATGACAAACGATGGAAACGACTCACATTGATTATGTATCTATATGGGCGAATATGAGTCAAAAGCAAACATCCTCCCAACGGTGAATGATAAACAGGAGCATCAAAGCCTCTGGCTGTATGAGGTGCTGTTGTCTGAAATCTGCCTTCACTCACTTCATCTACCAGAAACAAGAGCCTTGCAGTGATTAAAGTGTCATTGTTATCAACAGTAACTTGCATTAGCATTGCTTCCTCTTGCCGTGCTTCCCCTTGATGTTGTTTGTCATTTATTTATTTGTTTGGTTGTTTGTTTCTTTGTTTATTTTTTGAAATATTGTGTTGTGGCATTTCATTTGCATATTCCTCCTGAATGTGTGCCACTTTGCCTACAGCAATGTGTTGTGCAAATGTATCAAATTTTAATATTCTTGACGCTAAGGGGTCTGTGCATTATGAGAGTACAGATACGGCAACGGATTTCCAGATGAATACATTTCCACATTTCTACATTTGAAAAACAGACCCTAGTGCCCTCTACATATTTCAGATATATATTGCACACTTGAAAAATGTCTTTGTGAAATATAAATGTCACCATATAATGTTTCATTGTAAAAAGATACATAAGATATATATATATATATATATATGAAAAAATATATTAGATACAAAAGATTAACACCCTTAAAACAAGATACAGTTACTTGCTTAAAACAAAAATTATACACATTTAATATGTTGTTTTCTTACCCCTAAACCAATAAGACAGGATAAAACATGATATAATATGGATTATATAAAATATAAGAAGTATTCTCTGAAAATAATAACAATAATAATCATTTAATAAATAATAATTATTTGATCTTGTTTTAAGGATGTTTTGATATTTCTACTATAAACAAAACCACTGGTTATGAAAATGATTTACACAACTTTGTAACTTCCCCCTCTAAAATTCACCTCATATAGCCGTTGTGTATCTCCAAGCTGTCGACTAAAAAAACTTCATTTTCCTCACTGTCATCAAATTCACCATCTAATTCATCTTCCTCTCCTCGTCCCTGCGTCTTCAGTCTGGTGTTTGCTCTGTCTTCCTCCACCTTCCTCCTCTCCGTCACCTCTTGCAGCACCTGCATGTCCATCTCATCACAACCTCTGTTTGCTCCAATCATCTCCTGTATCTTTTCCAGAAGCTCTCTGACCTGGTGGTTCTCACCCCTGGCCTTATTATTAAAAACATGATACCTGTTTCCACATCTGTCAACAAGCCACTGCAGAGCTTTCCCTTCACATTCAATATGCTGCTCAATGGCTCGGTCTCCGAGCAGGTCCCCAAAAGTGAACAGAATTATACTGTGATCCCAAACTGTGGAGCCCAAAAGCCTCAAATGGTCCTCCATTGCCTTCAGCTCCTTCTCTTTAAAGGAACAGTCGACGCGAAGGACCAAAATGAAAGCTAGCGAACCAGAAGTGGATAGAGACAGACTGTGTGTGATTTCATCTTTATTCAGTTCAGGAGTTTGTTCTATGGGAAGATTCTTCCACCAGCCAGGGGTGTCTATGATGTTGACCTGCTGTCCTCCAACCTCTCCATGCCTCTGAACACACCGGGCTGTTCTTCTTGATCCAAACACCTGTTGGCCGAGGATAGTGTTCCCTGTTGAACTCTTCCCAGCTTCTCCATAACCCAGAAGCACAAGACAAAATTCTGAGAAATTCTTTTCAATATCTAGAAAAAGACATGAAAAACAACTGATTACTATTTGATCTTCAATAAAAGCCACACTTTTAGGAACAATTGTTGGCTGGTTGGTTAATGTTTT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160340 lncRNA upstream 207058 6978723 ~ 6980471 (+) True G141096
TU160475 lncRNA upstream 214045 6973260 ~ 6973484 (+) True G141221
TU160474 lncRNA upstream 215198 6972116 ~ 6972331 (+) True G141220
TU160333 lncRNA upstream 272345 6912496 ~ 6915184 (+) True G141089
TU160465 lncRNA upstream 308180 6879005 ~ 6879349 (+) True G141211
TU160508 lncRNA downstream 2258 7193425 ~ 7193627 (+) True G141254
TU160509 lncRNA downstream 4108 7195275 ~ 7195494 (+) True G141255
TU160594 lncRNA downstream 114517 7305684 ~ 7329095 (+) False G141321
TU160593 lncRNA downstream 135834 7327001 ~ 7329095 (+) True G141321
TU160627 lncRNA downstream 142255 7333422 ~ 7333632 (+) True G141354
CI01000027_07142789_07157141.mRNA mRNA upstream 29542 7142315 ~ 7157987 (+) True CI01000027_07142789_07157141
CI01000027_07055665_07057014.mRNA mRNA upstream 130275 7055117 ~ 7057254 (+) True CI01000027_07055665_07057014
CI01000027_06951132_06956691.mRNA mRNA upstream 230687 6951132 ~ 6956842 (+) False CI01000027_06951132_06956691
CI01000027_06947553_06950983.mRNA mRNA upstream 236546 6946261 ~ 6950983 (+) True CI01000027_06947553_06950983
CI01000027_06915303_06927001.mRNA mRNA upstream 260221 6915303 ~ 6927308 (+) True CI01000027_06915303_06927001
CI01000027_07216718_07225808.mRNA mRNA downstream 24601 7215768 ~ 7226571 (+) True CI01000027_07216718_07225808
CI01000027_07292677_07331000.mRNA mRNA downstream 101510 7292677 ~ 7331032 (+) True CI01000027_07292677_07331000
CI01000027_07375781_07378401.mRNA mRNA downstream 184614 7375781 ~ 7378421 (+) True CI01000027_07375781_07378401
CI01000027_07432479_07451012.mRNA mRNA downstream 241312 7432479 ~ 7452012 (+) True CI01000027_07432479_07451012
CI01000027_07455850_07459062.mRNA mRNA downstream 264683 7455850 ~ 7459062 (+) True CI01000027_07455850_07459062
TU160307 other upstream 229762 6952946 ~ 6957767 (+) True CI01000027_06951132_06956691
TU160326 other upstream 286606 6898411 ~ 6900923 (+) True G141082
TU160305 other upstream 476897 6707174 ~ 6710632 (+) True G141061
TU160291 other upstream 915929 6271367 ~ 6271600 (+) True G141052
TU160143 other upstream 1222203 5963206 ~ 5965326 (+) True G140924
TU160585 other downstream 277577 7468744 ~ 7468892 (+) True G141315
TU161924 other downstream 759536 7950703 ~ 7951942 (+) True CI01000027_07947743_07951397
TU161938 other downstream 835230 8026397 ~ 8032041 (+) True CI01000027_08026500_08029412
TU161951 other downstream 1067170 8258337 ~ 8258629 (+) True G142511
TU162507 other downstream 2537648 9728815 ~ 9729551 (+) True G143033

Expression Profile