RNA id: TCONS_00001234


Basic Information

Item Value
RNA id TCONS_00001234
length 305
lncRNA type retained_intron
GC content 0.34
exon number 2
gene id XLOC_000739
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55293424 ~ 55299173 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGCTTCAATACCGCAGTAAAGCAAGGATGTTTTGTCTTTCATTTATAATTTCTCTGCTCATGATTCCCGGTGAGTCTAAATGCTGTGCAGAACTTACACATTAAGTACTGTTAAATATTATGATAGATCATCAAGTATAGTTCAAATAGATCGATTTTGTCTTGTTGGACACTTCCTGTAATGTGGGGTGTTGCTGTCATTTTGGTCTTTTTGTTAAGTTTTTGCAATCCACTAGGTGGCATTTTAAATAGTATGAGTGAAGAGAGcatgatattgtgatattgtattatttatgtatttacc

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-42 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000152809

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001229 lncRNA upstream 46578 55246332 ~ 55247253 (+) True XLOC_000736
TCONS_00003216 lncRNA upstream 102569 55184779 ~ 55191262 (+) False XLOC_000735
TCONS_00003219 lncRNA downstream 20191 55314474 ~ 55579436 (+) True XLOC_000741
TCONS_00003220 lncRNA downstream 32283 55326566 ~ 55343851 (+) False XLOC_000742
TCONS_00003221 lncRNA downstream 32322 55326605 ~ 55343851 (+) True XLOC_000742
TCONS_00002882 lncRNA downstream 75234 55369517 ~ 55369839 (+) True XLOC_000744
TCONS_00002883 lncRNA downstream 75855 55370138 ~ 55407700 (+) False XLOC_000745
TCONS_00001231 mRNA upstream 6571 55279124 ~ 55287260 (+) True XLOC_000738
TCONS_00001230 mRNA upstream 18018 55264712 ~ 55275813 (+) True XLOC_000737
TCONS_00001227 mRNA upstream 46578 55239160 ~ 55247253 (+) False XLOC_000736
TCONS_00001228 mRNA upstream 46886 55239710 ~ 55246945 (+) False XLOC_000736
TCONS_00001225 mRNA upstream 148746 55137961 ~ 55145085 (+) False XLOC_000734
TCONS_00001236 mRNA downstream 10091 55304374 ~ 55310703 (+) True XLOC_000740
TCONS_00001237 mRNA downstream 54254 55348537 ~ 55353978 (+) True XLOC_000743
TCONS_00001238 mRNA downstream 158609 55452892 ~ 55453752 (+) True XLOC_000749
TCONS_00001239 mRNA downstream 181719 55476002 ~ 55477135 (+) True XLOC_000745
TCONS_00001240 mRNA downstream 184370 55478653 ~ 55515184 (+) True XLOC_000750
TCONS_00001221 other upstream 165252 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 1107675 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 1232621 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 1905950 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001160 other upstream 1925797 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001304 other downstream 2053615 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 2865868 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 3837009 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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