RNA id: TU160627


Basic Information

Item Value
RNA id TU160627
length 211
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G141354
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7333422 ~ 7333632 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATAATCTGTGAAGTTCTAGTAAAGCACTGGTTAAACGTCTTAATATTTTTGCAAGACATTAACCCCCGGTTTCACAGGCTTAAGCTAGTCTTAGACTAAAATGCTTGTTTGAGCTGTTTTAACTGAAAGTAACTTGTACATCTTAAAATATGTCATTGTTTTGTCTCAAGATGCACACCTGTAATGTTTTTTATAAAAGCTACTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160594 lncRNA upstream 4327 7305684 ~ 7329095 (+) False G141321
TU160593 lncRNA upstream 4327 7327001 ~ 7329095 (+) True G141321
TU160509 lncRNA upstream 137928 7195275 ~ 7195494 (+) True G141255
TU160508 lncRNA upstream 139795 7193425 ~ 7193627 (+) True G141254
TU160354 lncRNA upstream 142255 7187529 ~ 7191167 (+) True G141110
TU160628 lncRNA downstream 277 7333909 ~ 7334137 (+) True G141355
TU160637 lncRNA downstream 167525 7501157 ~ 7501487 (+) True G141364
TU160603 lncRNA downstream 168434 7502066 ~ 7514879 (+) True G141330
TU160652 lncRNA downstream 196167 7529799 ~ 7530002 (+) True G141378
TU160654 lncRNA downstream 202485 7536117 ~ 7536333 (+) True G141380
CI01000027_07292677_07331000.mRNA mRNA upstream 2390 7292677 ~ 7331032 (+) True CI01000027_07292677_07331000
CI01000027_07216718_07225808.mRNA mRNA upstream 106851 7215768 ~ 7226571 (+) True CI01000027_07216718_07225808
CI01000027_07142789_07157141.mRNA mRNA upstream 175435 7142315 ~ 7157987 (+) True CI01000027_07142789_07157141
CI01000027_07055665_07057014.mRNA mRNA upstream 276168 7055117 ~ 7057254 (+) True CI01000027_07055665_07057014
CI01000027_06951132_06956691.mRNA mRNA upstream 376580 6951132 ~ 6956842 (+) False CI01000027_06951132_06956691
CI01000027_07375781_07378401.mRNA mRNA downstream 42149 7375781 ~ 7378421 (+) True CI01000027_07375781_07378401
CI01000027_07432479_07451012.mRNA mRNA downstream 98847 7432479 ~ 7452012 (+) True CI01000027_07432479_07451012
CI01000027_07455850_07459062.mRNA mRNA downstream 122218 7455850 ~ 7459062 (+) True CI01000027_07455850_07459062
CI01000027_07469157_07471720.mRNA mRNA downstream 135332 7468964 ~ 7471999 (+) False CI01000027_07469157_07471720
CI01000027_07529488_07537870.mRNA mRNA downstream 195856 7529488 ~ 7539111 (+) True CI01000027_07529488_07537870
TU160307 other upstream 375655 6952946 ~ 6957767 (+) True CI01000027_06951132_06956691
TU160326 other upstream 432499 6898411 ~ 6900923 (+) True G141082
TU160305 other upstream 622790 6707174 ~ 6710632 (+) True G141061
TU160291 other upstream 1061822 6271367 ~ 6271600 (+) True G141052
TU160143 other upstream 1368096 5963206 ~ 5965326 (+) True G140924
TU160585 other downstream 135112 7468744 ~ 7468892 (+) True G141315
TU161924 other downstream 617071 7950703 ~ 7951942 (+) True CI01000027_07947743_07951397
TU161938 other downstream 692765 8026397 ~ 8032041 (+) True CI01000027_08026500_08029412
TU161951 other downstream 924705 8258337 ~ 8258629 (+) True G142511
TU162507 other downstream 2395183 9728815 ~ 9729551 (+) True G143033

Expression Profile