RNA id: TU160637


Basic Information

Item Value
RNA id TU160637
length 235
lncRNA type antisense_over
GC content 0.57
exon number 2
gene id G141364
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7501157 ~ 7501487 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATAAGAAGCAGATAGGTGGAGCGTGGGTGGAGTTCGCTCCCCAGAGCATTTGGCACTGCTCGTCCAGACTGGCACACACACCGCTGTAGCAGTAGGAGGAACCGTCCTTGCATGACTCTCCATTCTGCAGAAACACATTAGGAGGACAGTAGGGGGAAGTGCCGGTGCAGTACTCTGGCAAATCGCACTCTCCCAACGGCTCCCGACACACCGACCCGGCCACACGCAACTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160628 lncRNA upstream 167020 7333909 ~ 7334137 (+) True G141355
TU160627 lncRNA upstream 167525 7333422 ~ 7333632 (+) True G141354
TU160594 lncRNA upstream 172062 7305684 ~ 7329095 (+) False G141321
TU160593 lncRNA upstream 172062 7327001 ~ 7329095 (+) True G141321
TU160509 lncRNA upstream 305663 7195275 ~ 7195494 (+) True G141255
TU160603 lncRNA downstream 579 7502066 ~ 7514879 (+) True G141330
TU160652 lncRNA downstream 28312 7529799 ~ 7530002 (+) True G141378
TU160654 lncRNA downstream 34630 7536117 ~ 7536333 (+) True G141380
TU161766 lncRNA downstream 215633 7717120 ~ 7722230 (+) True G142360
TU161758 lncRNA downstream 283287 7784774 ~ 7800723 (+) False CI01000027_07789066_07797594
CI01000027_07469157_07471720.mRNA mRNA upstream 29158 7468964 ~ 7471999 (+) False CI01000027_07469157_07471720
CI01000027_07455850_07459062.mRNA mRNA upstream 42095 7455850 ~ 7459062 (+) True CI01000027_07455850_07459062
CI01000027_07432479_07451012.mRNA mRNA upstream 49145 7432479 ~ 7452012 (+) True CI01000027_07432479_07451012
CI01000027_07375781_07378401.mRNA mRNA upstream 122736 7375781 ~ 7378421 (+) True CI01000027_07375781_07378401
CI01000027_07292677_07331000.mRNA mRNA upstream 170125 7292677 ~ 7331032 (+) True CI01000027_07292677_07331000
CI01000027_07529488_07537870.mRNA mRNA downstream 28001 7529488 ~ 7539111 (+) True CI01000027_07529488_07537870
CI01000027_07541256_07541975.mRNA mRNA downstream 39769 7541256 ~ 7542152 (+) True CI01000027_07541256_07541975
CI01000027_07545610_07559939.mRNA mRNA downstream 44123 7545610 ~ 7560158 (+) True CI01000027_07545610_07559939
CI01000027_07561011_07562818.mRNA mRNA downstream 59404 7560891 ~ 7563845 (+) True CI01000027_07561011_07562818
CI01000027_07605090_07608785.mRNA mRNA downstream 103373 7604860 ~ 7609540 (+) True CI01000027_07605090_07608785
TU160585 other upstream 29443 7468744 ~ 7468892 (+) True G141315
TU160307 other upstream 543390 6952946 ~ 6957767 (+) True CI01000027_06951132_06956691
TU160326 other upstream 600234 6898411 ~ 6900923 (+) True G141082
TU160305 other upstream 790525 6707174 ~ 6710632 (+) True G141061
TU160291 other upstream 1229557 6271367 ~ 6271600 (+) True G141052
TU161924 other downstream 449216 7950703 ~ 7951942 (+) True CI01000027_07947743_07951397
TU161938 other downstream 524910 8026397 ~ 8032041 (+) True CI01000027_08026500_08029412
TU161951 other downstream 756850 8258337 ~ 8258629 (+) True G142511
TU162507 other downstream 2227328 9728815 ~ 9729551 (+) True G143033

Expression Profile