RNA id: TU160652


Basic Information

Item Value
RNA id TU160652
length 204
lncRNA type intronic
GC content 0.39
exon number 1
gene id G141378
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7529799 ~ 7530002 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACGTATTCAGTGTTGGCACATGTGAACATGTAAATGAACATTAGCAAGCGTAGAGGCGCAGATATAGGGGAGACCGGGTTGATTTTTTAGACACATAGCCTTGGGTTTAAAAAGAAAAAAAAGAAGAAAATATGGAGGAGAAGAATGAATATTTCCACTGTTTCTGTCCATGGGGAAAAGGTTAGGCCTACAGTTACTTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160603 lncRNA upstream 14920 7502066 ~ 7514879 (+) True G141330
TU160637 lncRNA upstream 28312 7501157 ~ 7501487 (+) True G141364
TU160628 lncRNA upstream 195662 7333909 ~ 7334137 (+) True G141355
TU160627 lncRNA upstream 196167 7333422 ~ 7333632 (+) True G141354
TU160594 lncRNA upstream 200704 7305684 ~ 7329095 (+) False G141321
TU160654 lncRNA downstream 6115 7536117 ~ 7536333 (+) True G141380
TU161766 lncRNA downstream 187118 7717120 ~ 7722230 (+) True G142360
TU161758 lncRNA downstream 254772 7784774 ~ 7800723 (+) False CI01000027_07789066_07797594
TU161759 lncRNA downstream 254772 7784774 ~ 7798890 (+) True CI01000027_07789066_07797594
TU161855 lncRNA downstream 274540 7804542 ~ 7804806 (+) True G142446
CI01000027_07469157_07471720.mRNA mRNA upstream 57800 7468964 ~ 7471999 (+) False CI01000027_07469157_07471720
CI01000027_07455850_07459062.mRNA mRNA upstream 70737 7455850 ~ 7459062 (+) True CI01000027_07455850_07459062
CI01000027_07432479_07451012.mRNA mRNA upstream 77787 7432479 ~ 7452012 (+) True CI01000027_07432479_07451012
CI01000027_07375781_07378401.mRNA mRNA upstream 151378 7375781 ~ 7378421 (+) True CI01000027_07375781_07378401
CI01000027_07292677_07331000.mRNA mRNA upstream 198767 7292677 ~ 7331032 (+) True CI01000027_07292677_07331000
CI01000027_07541256_07541975.mRNA mRNA downstream 11254 7541256 ~ 7542152 (+) True CI01000027_07541256_07541975
CI01000027_07545610_07559939.mRNA mRNA downstream 15608 7545610 ~ 7560158 (+) True CI01000027_07545610_07559939
CI01000027_07561011_07562818.mRNA mRNA downstream 30889 7560891 ~ 7563845 (+) True CI01000027_07561011_07562818
CI01000027_07605090_07608785.mRNA mRNA downstream 74858 7604860 ~ 7609540 (+) True CI01000027_07605090_07608785
CI01000027_07618538_07623119.mRNA mRNA downstream 87283 7617285 ~ 7624255 (+) True CI01000027_07618538_07623119
TU160585 other upstream 58085 7468744 ~ 7468892 (+) True G141315
TU160307 other upstream 572032 6952946 ~ 6957767 (+) True CI01000027_06951132_06956691
TU160326 other upstream 628876 6898411 ~ 6900923 (+) True G141082
TU160305 other upstream 819167 6707174 ~ 6710632 (+) True G141061
TU160291 other upstream 1258199 6271367 ~ 6271600 (+) True G141052
TU161924 other downstream 420701 7950703 ~ 7951942 (+) True CI01000027_07947743_07951397
TU161938 other downstream 496395 8026397 ~ 8032041 (+) True CI01000027_08026500_08029412
TU161951 other downstream 728335 8258337 ~ 8258629 (+) True G142511
TU162507 other downstream 2198813 9728815 ~ 9729551 (+) True G143033

Expression Profile