RNA id: TU162952


Basic Information

Item Value
RNA id TU162952
length 227
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G143422
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8170586 ~ 8170812 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGAAACAACATGGGCAGTTGTCGCCTAATGGTTAGAGAATCGGACTTGTAACCTGCTGGTTGCAGGTTGCAGGTTCGAGTCTCAGTACCGGCAGGAAATATATGTGGGGGGAGTGAATGAACAGCGCTCTCCTCCACTCTCATTACCCACAACTGAGGTGCCCTTGACCTAACCCCCAATCACTCCCTGGGTGCCGCAGCAAAAAAAAAAAAAAGAAAAAGTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162930 lncRNA downstream 53040 8115839 ~ 8117546 (-) True G143403
TU162922 lncRNA downstream 76993 8093317 ~ 8093593 (-) True G143395
TU162920 lncRNA downstream 79855 8090002 ~ 8090731 (-) True G143393
TU162916 lncRNA downstream 117728 8052511 ~ 8052858 (-) True G143389
TU162834 lncRNA downstream 136605 8032981 ~ 8033981 (-) True G143314
TU163033 lncRNA upstream 57339 8228151 ~ 8228372 (-) True G143502
TU163035 lncRNA upstream 62373 8233185 ~ 8233388 (-) True G143504
TU163007 lncRNA upstream 106456 8277268 ~ 8319468 (-) True G143476
TU163088 lncRNA upstream 188010 8358822 ~ 8359102 (-) True G143557
TU163000 lncRNA upstream 192860 8363672 ~ 8371459 (-) True G143469
CI01000027_08134523_08134951.mRNA mRNA downstream 35277 8134487 ~ 8135309 (-) True CI01000027_08134523_08134951
CI01000027_08091338_08097220.mRNA mRNA downstream 73366 8091293 ~ 8097220 (-) True CI01000027_08091338_08097220
CI01000027_08081583_08083496.mRNA mRNA downstream 87090 8081269 ~ 8083496 (-) True CI01000027_08081583_08083496
CI01000027_08073979_08077754.mRNA mRNA downstream 92832 8073661 ~ 8077754 (-) True CI01000027_08073979_08077754
CI01000027_08016916_08025375.mRNA mRNA downstream 145131 8016529 ~ 8025455 (-) True CI01000027_08016916_08025375
CI01000027_08285855_08291534.mRNA mRNA upstream 114957 8285769 ~ 8292823 (-) True CI01000027_08285855_08291534
CI01000027_08422679_08426771.mRNA mRNA upstream 251867 8422679 ~ 8426771 (-) True CI01000027_08422679_08426771
CI01000027_08429132_08434558.mRNA mRNA upstream 257500 8428312 ~ 8436258 (-) True CI01000027_08429132_08434558
CI01000027_08443968_08446252.mRNA mRNA upstream 272365 8443177 ~ 8446436 (-) True CI01000027_08443968_08446252
CI01000027_08483034_08503082.mRNA mRNA upstream 312127 8482939 ~ 8503082 (-) True CI01000027_08483034_08503082
TU162851 other downstream 284537 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 496817 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 730395 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 1012588 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 1012773 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 2367968 10538780 ~ 10542148 (-) True G144365

Expression Profile