RNA id: TU163035


Basic Information

Item Value
RNA id TU163035
length 204
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G143504
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8233185 ~ 8233388 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCAGCAATAACACTCCCTTTTTTAGTGGCCAGAAAGCTACTAAAAACATATTTAAAACAGTTCATGTGACTACAGTGGTTCAACTTTAATATTATAAAGCAACGAGAATACTTTTTGTGTGCCAAAAATAACAAAATAGTGACTTTATTCCACAATATCTAGTGATGGGCGATTTCAAAACACTGCTTCATTAAGCTTCGAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163033 lncRNA downstream 4813 8228151 ~ 8228372 (-) True G143502
TU162952 lncRNA downstream 62373 8170586 ~ 8170812 (-) True G143422
TU162930 lncRNA downstream 115639 8115839 ~ 8117546 (-) True G143403
TU162922 lncRNA downstream 139592 8093317 ~ 8093593 (-) True G143395
TU162920 lncRNA downstream 142454 8090002 ~ 8090731 (-) True G143393
TU163007 lncRNA upstream 43880 8277268 ~ 8319468 (-) True G143476
TU163088 lncRNA upstream 125434 8358822 ~ 8359102 (-) True G143557
TU163000 lncRNA upstream 130284 8363672 ~ 8371459 (-) True G143469
TU162990 lncRNA upstream 152573 8385961 ~ 8388109 (-) True G143459
TU163091 lncRNA upstream 158070 8391458 ~ 8391661 (-) True G143560
CI01000027_08134523_08134951.mRNA mRNA downstream 97876 8134487 ~ 8135309 (-) True CI01000027_08134523_08134951
CI01000027_08091338_08097220.mRNA mRNA downstream 135965 8091293 ~ 8097220 (-) True CI01000027_08091338_08097220
CI01000027_08081583_08083496.mRNA mRNA downstream 149689 8081269 ~ 8083496 (-) True CI01000027_08081583_08083496
CI01000027_08073979_08077754.mRNA mRNA downstream 155431 8073661 ~ 8077754 (-) True CI01000027_08073979_08077754
CI01000027_08016916_08025375.mRNA mRNA downstream 207730 8016529 ~ 8025455 (-) True CI01000027_08016916_08025375
CI01000027_08285855_08291534.mRNA mRNA upstream 52381 8285769 ~ 8292823 (-) True CI01000027_08285855_08291534
CI01000027_08422679_08426771.mRNA mRNA upstream 189291 8422679 ~ 8426771 (-) True CI01000027_08422679_08426771
CI01000027_08429132_08434558.mRNA mRNA upstream 194924 8428312 ~ 8436258 (-) True CI01000027_08429132_08434558
CI01000027_08443968_08446252.mRNA mRNA upstream 209789 8443177 ~ 8446436 (-) True CI01000027_08443968_08446252
CI01000027_08483034_08503082.mRNA mRNA upstream 249551 8482939 ~ 8503082 (-) True CI01000027_08483034_08503082
TU162851 other downstream 347136 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 559416 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 792994 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 1075187 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 1075372 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 2305392 10538780 ~ 10542148 (-) True G144365

Expression Profile