RNA id: TU163007



Basic Information


Item Value
RNA id TU163007
length 6469
lncRNA type read_through
GC content 0.37
exon number 3
gene id G143476
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8277268 ~ 8319468 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCTGACCATGTATTGCTTAAGTGTTATCTGACACAATTAAGATTAATTTTTTCTGACACAGTTTAACTCTGAGATCTTGTCGTATTTTATTACCATTTTTTTTTAAACTATAGTGAATAAACTGTAATAATGAATGAAATGTTCAAGGTGTCTGAATAAATTTTGTTGTGACTGTATATATAAGGGGTGTAACAGTACATGTATTTGTCCCGAACCGTCACGGTACTGACATCTCGGTTCGGTGCATACAAGACAACAAATACAGTCGGTCACAGGTGATCCACACTCCAATCCAGAAGAGGGCGCACACGGTAATGCAACACTGTTTGCTAACCGCCACAACAGGAAAAAGCGCAGCAAATTTTTAAACAGTATATTAAATTAAAAAAAATTTTAGAATAAAAATTAGAATGAAAATGCAAAAGGAATTTTAGCCAATTTAATCAATTTAATTATACAGTATATGCTAATGAAATTTCAAATCCCATCTCAAAACAGCATATATCAATATGTATTAATAAAAGCAAGCAAAATCTTATTTTGCTAAATAAACGAATCACTCAAATAGTATATTAACTTCTGAAGCCACTGTTTGCAGCGTTTGTTTTATTTCCATGAATAAAACACTGCTTATCACATTCACTGTGAATACAAGTAGTACTTGATGCCTGGTTCGGACACAGTGTTACAAATGTTCTGTGGAGAATGTTGCGGTTCATGCTCAAACATGTATTGTTGTGTATGTGTGCCGACAAGTATAGCTTCTCTTTGAAGTACAGTATATCTTCTCTACCTCACGCTGCGTTCTCCAATCCAAGCCTGCGCACTCTGAACTGAGACCAATCTGCCATTTTCTCCATCCAGTTCTAGCCCAAAGAGTATATTACAAGAGCAGCATTTACAGAGACCTCTCAAAGGCTTAGACTACACAGCTGTGTAAGAGACCCCTGCAGAACCGGTCATTAGGCCATATGGTCACAAGGTCAATTTCCCCTTAATAAACATCCAGTCAGCAACTCAACATTTAAAACACACCATCTGAAAGCTCCAGTATCAGCTATATAAAAAGCAACCAGCTACTTTTAATACTTTTTTAATGACTTTCCATGAGTTTTCTTTGACCTTCCAGTCATTTGTGTTAACTGGGTTTTTAGAGAAATTACAAAAGGTTGCAGGGCAGATATACAGTTCATTTAAAAGTCAGGCATCATATATTAAAATTAATCTGCGAAGTACATGAACATTATTATTTAATCATTCAGATACCAATATACCGATCAGGCTTGAAAGGAAAAAGAAAAGTTTTTTTTTTTTTTTTTAAATACACTTTTTTCCTAAGTATTTCCTTTTGCCACTTTATCAGTTCTGTGATCTGAATATGTGAGTATAGATCAAACATAAACCTAATTTCAACTCAAATCTTAATGGCTTCAGACTGTTTCTGTCTGATCTCTCTCATGACAAGATGCCAGCTGGTGTCCCTGCCTTTAATCTGATTAATTGGAAACTATATGAGGTGGCACCTGGTCAAGAGTGAGGCCTATAGATGTGCTAACATCGAATTCTAATCACACGCTCAATGATGACACAGATTCTTCTGGTCTTCCAATGGGATAATCCCACATGTAATCCTAATCTCAATCTCCAACCATTAATCTCAATCCCAGACCTGATTAAAAGATCAAACGTGGCTCAGAAACCACTCTAATTAAGGCTCCCTCACTGTGGCATCCCATATCAATTTGCATTGTATATTAATATTTTGCATCTCTTCTACAATCTGTTAATTATCTAGAATCAGAACACACTTTAGCAGAGCTACAGAGAGAAAGAACCTACAACCAGATAGACCTTCAGTTTTATACAAAAAAAAAGAGAGAAAAATGTATCATTTACTCACCCTCACCATGTTTTGCATCATTGAAGGATGAATATGCACAAGCGCAAATGAGATTCTAAAAGATTTAGTATAAAACTGACAGATTTTGGTCTGTTTCTCACACAAAGCTATTGTAAGCCTTGACATATGAAGTATGAGTCACATGCTCTAGTTTATGGTGCTCTTTTCTCTTTTTTGACAGCTTGACAAGAAAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTGTTCCTTTAAGTGTTCTGCTAAAGGTTCCTGAACAGTGTATGTTAATGTATTTGTGCATGTCTGAATGGAACAGACTGTGTGTGTGTGTGTGTGTGTTTAACGCCCTTGGTTTGGTGTCAGTAAGCGTGTGTGTGTTTGTGTGTATGTGTGATAAATGCACTCCGCTTGTCAGATTTGAGATTCTCATTAGTCTGAGCAAGAGGCATTGAGAGGCCATTACTCTTCTGCCTCACTGACGTGTGTGTGAGTGCGTGTTTTCAGCGACGTGTGTTGGTCTTCTAAAATGAGGAGGCAAAATCTGCACTCTGATTTTGGTTGTAAATTTCTAAAATTTGTAAATTTGTCACTTGTCAACAAGTAACCAATACCATAATTACTTTATTTTTACAGTATGTTCACATAATTATTATAATCAAATCACATAAAAATGTAAGCATTTTAAAAGTTTTTTACATTAAACCACAATAACTACAACAAATTAGTAAGTGAATTTGAATTGAATTGGCCACACCCCACAGGATGCTGAATTGCAATGACAGGAAGAGGAATTTACTGGATAGCAAATCAAAGAAATTCAACAGGTAACGGCATTCTGGGAAATTAAGTGTTCTTCCGTCCGGGTCCATGCCTCTGTCTGTAAAGACAGTAATAAAGTATTTAATAGTTATTAATAAAATATTTTTTCTAAAAAGTCATTCTTGACAAACCTTTTTTGTTAAAATACAGTTCTTTAGGTTATGAGTTGATATGAAATTTATGGAATTACATGATTTGATTTGCATTTCCAATTCAATTCCTGAATGTAAGCAGAATTAAAATGGACTCAAATTTCAAGAAATTTGTATAACATTTTTAGTAGACAATAAAAGTTTGTCAAGAAATTTGATGGTTTATAGTCTGGATGGATGGATGGATTCACTTTTGTGGACCAGAGAGGAAGAACAATTAATTAACTAGAATGCATTAACTGTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGACACAGGATAAGAACAATGTAAGAGACAGGTATGTAGACAAAAAAATTAGGTTTAAAAAAAGCTCAGAATATGCAGACAGGCAGGCGGAGATATGAAAAGAGGTGACATTGGTATACGAAGCAGGCATACGAGTGAGAGAGTGGGGGCCGTACGAGCACTCTGGCCTTTCAAATGGCTCGTTATCGTTCTTTGCAAAAGGGCAGAGACACAGATAAATGCAATATCATTAACGCAGAACACACACATAACACACGCTACCTTTAGTGGTTACCACGGATACAGCTGTTCCGTCGGCATCTTGGCCCGATTACAAAAGCTCAAATTCACAACGGTGGATATTTTCTAATCATTTGAAAACAGGCTGTGCTTAAAAGGTTTTAAATTAAAAGGAGACCATGTCAATACATTCGATTTTTGACCGCAAAGCCTTTAAACCATTTAAAGCCTACCAAAATTTGCATTCTGTCTGTGTAAAGTCACCCGACTTAACAGCCACACAGGAGGGAAACAGGTAAAGAAGTCTGCTTGTCCTCACAGATGTGCTGGGCTACAACAAGAACCGCGGGACCTTTAATGCAAGCTAGCGGATAGGTGGAAGTACAGAATGACTGCAGGCCTCTGTCACACCAATTACATCCCGGCAGACATTTCTCACCTCCCTCAAGCAAAGGCCTGCAGCTGTGCACAACACAGCCCTGAGAAAAGACATTCAGAGTCCACACAAAAAGCCAGAGAAGTTCAGAGAAAGAGAAACTTGCACCCAAGTGTGTGTGTGTGTCTGTACACCAGTGTTAAGAAAGCTACTTTTGAAACTGCGGCTTACCAAACTAATTTAAAATACTTCAACAATTGTCAAGCTATTCTAAAAGTTACTTAAAGTACATTAAGGGGCAATATATTTAAGATATAAATCATTACATATATCAAATTATACATTGTCAAAAAAAAAAATTTAACAGCCCAGTGACAGTCTATGCAACTACCATTTTGATGCTTCAAAACATTCATAAAGACATCATAAAACTAATCCATATGAATTAAGTGGTTTAATCCGAATTTTCTGAAGAGACACAATCACTTTATATGATGAACAGATTTAATTTAGGCTTTTATTCACATATAAAACATTCATCAACTCACACATCAGATATGGTAAACGGAAGCTCAAGCATGTTTGCTTGACGTGCGAGAACCAATGAGGTTCATTCTCGTGTCTTACGCAGAACGTTTGAGCTTCCGCAAGAACCAATGAAGTTTGTTCTCGCATGTCAAGCAAGTTCTGTTTACGTTCCCTGATTAATGTTTATATGTGAATAAAACCGTAAATTTCATCAGTTCAGCATATAAAGCGATCGTGTCCCTTCAGAAAATTTAGACTAAACCGCTCAATTCATATGGATTTTTTTTTTACGATCTCTTTATGAACTTTTTGAAGTGTCAAAGTGATAGTTGCTTAGCTGCATATATGGAGGGACAGAAATCTCTCAGATTTCATTAAAAATATCTTTATTTGTGTTCCGAAGATGAACAAAAGTCTTACAGGTTTAAAAGGATGTGAGGATGAGTAAATTATGACATTATTTTCATTTTTGGGTGAACTAACCCTCTAAGTAGTTTTGCTACTTCCAGTTAGTTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTTATTACTCACCCTCATATCGTTCCACACCCGTAAGGCCTTCGGAACACAAATTAAGTTCAATCATGACAACTCTCGGAGTGGATTAAATTCAACCAGCATTTATTGGCATGGGGCATGAAGTATACATGGCTTGATTTTGGCGTACGAGATCTGCTACGCTGCTGCTGTTGCTGCTGCTACTGCTGTTACTGCTGCTGCTGAGCAAATACAAATATGTTCAGCTTAGTCAAATAAAACAACAAAGAAAAGGCTGCTGCAAGAATGGTAGAACCCCGTAGCAGATCTCTACAGGTGGCGCTGGGGAGGAGGAGGGATAACAGCGCTTCACATTGCGTGCTTGTTGATCACAGGCTAGGGTACGATATATATGGTTGCGTGGATTTGGAATTACTTCTGAATGGCTGGTGCCACGGCATAGAAAGAACCAATCAGCGCTCGGTTAAAGTGTCATGATTGAACTATGTATATATTTTTGATTAAATCCGATGGCTCAGTGAGGCCTCCATTCTCCATTCCTCTCTCAAGGTCCATAAAGGTACTAAAAACATATTTAAAACAGTTCATGCGAGTTCAGTAGTTCTATCTTAATATTATAAAGCAACGAGAATATTTTTTGTGCGCCAAAAAAACAAAATAACGACTTTAACAATATAGTGATGGGTCGTTGTTTTGTGTTTTCTCGTCGCTTTATAATATTAAGGTAGAACTACTGAACTCGCATGAACTGTTTTAAATATGTTTTTAGTACCTTTATGGATCTTGAGAGAGGAAATGTCATTGCTTTGAATGTAGGTCTCACTGAGCCATCAGATTTAATCAAAAATATCTTAATTTGTGTTCCGAAGATGAATGAAGGCCTTATGGGTGTGGAACGGCATGAGGGTGAGTAATAAATTACATTATTTTCATTTTTGGGTGAACTAACCCCTTAACCCAGTGCAAGTCAGACTTTTCACCACTGCATAAAACCTGTCCACTTTGCTGCTTATTTTGGCCAGAAATTGTCCATTTAGCCAGAAAGAGATTGTCTGTGACATGTAAAGAGACCATTCACAGTTTATGTTTGTATATGCTGTTAAGCGGCAGGTAAATCTGAAATCCATGGCACCACTATAATAGGCCGGCACGCAAAAACTCATTCAAATAATGACAGTCTGTAAACGGCTGTAGGGAAAACACAGTAAGAAAAATACTGAGACTGAGATTTTTTTTTCTCTCCAAAGTATCAAAAACAGACAATTCACAGACACAACAGTGGAATATCCAGTTCTGCTAGTGAATATCTAGTTTACTTGCTATTAAGTGCCTCAAATAAAACATTTTTAGGCAATCATCTATGTGCTTTTTAGTTCTGTGTGGCAGACAGTTAGTACTGCAAGTATACGATTGTGAAAAAGAAAACTTCAAACTCCAACGTGTATGACGTTACAAGCTGATGATCATCTTTAGACATCTCAAAGACAAACAGGTATGCAGAACAAACAACAATCTTGAGACCCACTGAGATTAAACTTCGTCCAAGATCACTGTTACACAGAAACAAATCTCGCATACTATGACACAGAATTCTGATTATCTGAGATTATGTGGTCAGGAATGAGAACAGTAATCTTCAAAGATCACTGGCTTCTGCCAGCATCTGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163035 lncRNA downstream 43880 8233185 ~ 8233388 (-) True G143504
TU163033 lncRNA downstream 48896 8228151 ~ 8228372 (-) True G143502
TU162952 lncRNA downstream 106456 8170586 ~ 8170812 (-) True G143422
TU162930 lncRNA downstream 159722 8115839 ~ 8117546 (-) True G143403
TU162922 lncRNA downstream 183675 8093317 ~ 8093593 (-) True G143395
TU163088 lncRNA upstream 39354 8358822 ~ 8359102 (-) True G143557
TU163000 lncRNA upstream 44204 8363672 ~ 8371459 (-) True G143469
TU162990 lncRNA upstream 66493 8385961 ~ 8388109 (-) True G143459
TU163091 lncRNA upstream 71990 8391458 ~ 8391661 (-) True G143560
TU163105 lncRNA upstream 122041 8441509 ~ 8442365 (-) True G143570
CI01000027_08134523_08134951.mRNA mRNA downstream 141959 8134487 ~ 8135309 (-) True CI01000027_08134523_08134951
CI01000027_08091338_08097220.mRNA mRNA downstream 180048 8091293 ~ 8097220 (-) True CI01000027_08091338_08097220
CI01000027_08081583_08083496.mRNA mRNA downstream 193772 8081269 ~ 8083496 (-) True CI01000027_08081583_08083496
CI01000027_08073979_08077754.mRNA mRNA downstream 199514 8073661 ~ 8077754 (-) True CI01000027_08073979_08077754
CI01000027_08016916_08025375.mRNA mRNA downstream 251813 8016529 ~ 8025455 (-) True CI01000027_08016916_08025375
CI01000027_08422679_08426771.mRNA mRNA upstream 103211 8422679 ~ 8426771 (-) True CI01000027_08422679_08426771
CI01000027_08429132_08434558.mRNA mRNA upstream 108844 8428312 ~ 8436258 (-) True CI01000027_08429132_08434558
CI01000027_08443968_08446252.mRNA mRNA upstream 123709 8443177 ~ 8446436 (-) True CI01000027_08443968_08446252
CI01000027_08483034_08503082.mRNA mRNA upstream 163471 8482939 ~ 8503082 (-) True CI01000027_08483034_08503082
CI01000027_08514843_08515829.mRNA mRNA upstream 195020 8514488 ~ 8518341 (-) True CI01000027_08514843_08515829
TU162851 other downstream 391219 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 603499 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 837077 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 1119270 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 1119455 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 2219312 10538780 ~ 10542148 (-) True G144365

Expression Profile