RNA id: TU163133


Basic Information

Item Value
RNA id TU163133
length 372
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G143598
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8657309 ~ 8657680 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAAAGCTAAACATAGTTCACAGAGTGAAAGTTGCTCGCTGGCAGAGAAAAACAAACCGGACTTTGTAGTTTTATAGTTTTTTAGAGTACCGCAATGACCTTTAAATGAAATGCAGTCTTATTTATCATCACAGAATTATAAAGTCTGTCCGCCTTTTTGTTTATTCACCTTTTCAGCGTAATGCAGTGTGAGATGCTGATGCTTCGAATAGCTGAAATGCACTGGATTCCAATTAAAGCGCAGTGAAATTCAGCATCTACAATGAAAAGATTATCCAGCATTCCCCGTATAATGAGACAGACTTTTCTGTGGTTCTGATCGTCGCTCAGCCTCTGGCTGACCTGCTGATAGAGTCTGAGTGAGCAGTGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163132 lncRNA downstream 1821 8655180 ~ 8655488 (-) True G143597
TU163010 lncRNA downstream 66989 8578428 ~ 8590320 (-) True G143479
TU162994 lncRNA downstream 124131 8528645 ~ 8533178 (-) True G143463
TU163120 lncRNA downstream 149345 8507732 ~ 8507964 (-) True G143585
TU163105 lncRNA downstream 214944 8441509 ~ 8442365 (-) True G143570
TU163136 lncRNA upstream 2380 8660060 ~ 8660513 (-) True G143601
TU163137 lncRNA upstream 3278 8660958 ~ 8661221 (-) True G143602
TU163138 lncRNA upstream 3907 8661587 ~ 8661806 (-) True G143603
TU163143 lncRNA upstream 26425 8684105 ~ 8684426 (-) True G143608
TU163150 lncRNA upstream 51447 8709127 ~ 8709529 (-) True G143615
CI01000027_08595524_08646502.mRNA mRNA downstream 10807 8594938 ~ 8646502 (-) True CI01000027_08595524_08646502
CI01000027_08568349_08570750.mRNA mRNA downstream 86559 8567985 ~ 8570750 (-) True CI01000027_08568349_08570750
CI01000027_08537911_08550747.mRNA mRNA downstream 105851 8536827 ~ 8551458 (-) True CI01000027_08537911_08550747
CI01000027_08514843_08515829.mRNA mRNA downstream 138968 8514488 ~ 8518341 (-) True CI01000027_08514843_08515829
CI01000027_08483034_08503082.mRNA mRNA downstream 154227 8482939 ~ 8503082 (-) True CI01000027_08483034_08503082
CI01000027_08671118_08685781.mRNA mRNA upstream 13415 8671095 ~ 8685781 (-) True CI01000027_08671118_08685781
CI01000027_08688706_08696073.mRNA mRNA upstream 31011 8688691 ~ 8697369 (-) True CI01000027_08688706_08696073
CI01000027_08701843_08702938.mRNA mRNA upstream 43102 8700782 ~ 8702938 (-) True CI01000027_08701843_08702938
CI01000027_08713799_08734144.mRNA mRNA upstream 55874 8713554 ~ 8734144 (-) True CI01000027_08713799_08734144
CI01000027_08820113_08821952.mRNA mRNA upstream 162339 8820019 ~ 8822352 (-) True CI01000027_08820113_08821952
TU162851 other downstream 771260 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 983540 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 1217118 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 1499311 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 1499496 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 1881100 10538780 ~ 10542148 (-) True G144365

Expression Profile