RNA id: TU163137


Basic Information

Item Value
RNA id TU163137
length 264
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G143602
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8660958 ~ 8661221 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGATGAGCGTTGACTCAGTGATGGCTTCCATGTTTTGCCTGCATGGGTGAATATTTGTATGTTACCATGACTCTGTCTAGAAGTGCAAAAAGAAAATTTGGTAAAGAAGATCTAGTTTCTCCTACCTGAAATGCAGCTCAACCAGAGCTTTGGAATTGTCAGGTGTATATTATTAAGCCAGGAGATGAGTGGAATGTGGATTTATTCGGCTCAGCCAGGCCTCAGGGTCTGTCTCCTCTGGGCTATTCATTAAGGGAATTATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163136 lncRNA downstream 445 8660060 ~ 8660513 (-) True G143601
TU163133 lncRNA downstream 3278 8657309 ~ 8657680 (-) True G143598
TU163132 lncRNA downstream 5470 8655180 ~ 8655488 (-) True G143597
TU163010 lncRNA downstream 70638 8578428 ~ 8590320 (-) True G143479
TU162994 lncRNA downstream 127780 8528645 ~ 8533178 (-) True G143463
TU163138 lncRNA upstream 366 8661587 ~ 8661806 (-) True G143603
TU163143 lncRNA upstream 22884 8684105 ~ 8684426 (-) True G143608
TU163150 lncRNA upstream 47906 8709127 ~ 8709529 (-) True G143615
TU162998 lncRNA upstream 50582 8711803 ~ 8713014 (-) True G143467
TU163157 lncRNA upstream 77393 8738614 ~ 8738830 (-) True G143622
CI01000027_08595524_08646502.mRNA mRNA downstream 14456 8594938 ~ 8646502 (-) True CI01000027_08595524_08646502
CI01000027_08568349_08570750.mRNA mRNA downstream 90208 8567985 ~ 8570750 (-) True CI01000027_08568349_08570750
CI01000027_08537911_08550747.mRNA mRNA downstream 109500 8536827 ~ 8551458 (-) True CI01000027_08537911_08550747
CI01000027_08514843_08515829.mRNA mRNA downstream 142617 8514488 ~ 8518341 (-) True CI01000027_08514843_08515829
CI01000027_08483034_08503082.mRNA mRNA downstream 157876 8482939 ~ 8503082 (-) True CI01000027_08483034_08503082
CI01000027_08671118_08685781.mRNA mRNA upstream 9874 8671095 ~ 8685781 (-) True CI01000027_08671118_08685781
CI01000027_08688706_08696073.mRNA mRNA upstream 27470 8688691 ~ 8697369 (-) True CI01000027_08688706_08696073
CI01000027_08701843_08702938.mRNA mRNA upstream 39561 8700782 ~ 8702938 (-) True CI01000027_08701843_08702938
CI01000027_08713799_08734144.mRNA mRNA upstream 52333 8713554 ~ 8734144 (-) True CI01000027_08713799_08734144
CI01000027_08820113_08821952.mRNA mRNA upstream 158798 8820019 ~ 8822352 (-) True CI01000027_08820113_08821952
TU162851 other downstream 774909 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 987189 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 1220767 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 1502960 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 1503145 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 1877559 10538780 ~ 10542148 (-) True G144365

Expression Profile