RNA id: TU163143


Basic Information

Item Value
RNA id TU163143
length 322
lncRNA type intronic
GC content 0.37
exon number 1
gene id G143608
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8684105 ~ 8684426 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTCGATTCATATTGATTCGTTTTCCGATCTCTTAATGAAGTTTTTGGAGCATCAAAGTGGTAGTTACAAGGCAGTCAAACTGCCAAAGTCACATGATTTCAGTAAACAAGGCTTCGTTACATCATAAGTGTTTCGAAAACGTTTCGAAATTTCAATGGTTCACGTGACTTTGACAGTTTGATACGTGCTCCGAACCACTGATTCGAAACAAAAGATTCGTAAAGCTTCGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCCTCACTAGATATTGTTGAATAAAGTCATTATTTTGTTTTTTTGGTGCTCAAAAAGTATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163138 lncRNA downstream 22299 8661587 ~ 8661806 (-) True G143603
TU163137 lncRNA downstream 22884 8660958 ~ 8661221 (-) True G143602
TU163136 lncRNA downstream 23592 8660060 ~ 8660513 (-) True G143601
TU163133 lncRNA downstream 26425 8657309 ~ 8657680 (-) True G143598
TU163132 lncRNA downstream 28617 8655180 ~ 8655488 (-) True G143597
TU163150 lncRNA upstream 24701 8709127 ~ 8709529 (-) True G143615
TU162998 lncRNA upstream 27377 8711803 ~ 8713014 (-) True G143467
TU163157 lncRNA upstream 54188 8738614 ~ 8738830 (-) True G143622
TU163158 lncRNA upstream 54421 8738847 ~ 8739070 (-) True G143623
TU163171 lncRNA upstream 80051 8764477 ~ 8764696 (-) True G143636
CI01000027_08595524_08646502.mRNA mRNA downstream 37603 8594938 ~ 8646502 (-) True CI01000027_08595524_08646502
CI01000027_08568349_08570750.mRNA mRNA downstream 113355 8567985 ~ 8570750 (-) True CI01000027_08568349_08570750
CI01000027_08537911_08550747.mRNA mRNA downstream 132647 8536827 ~ 8551458 (-) True CI01000027_08537911_08550747
CI01000027_08514843_08515829.mRNA mRNA downstream 165764 8514488 ~ 8518341 (-) True CI01000027_08514843_08515829
CI01000027_08483034_08503082.mRNA mRNA downstream 181023 8482939 ~ 8503082 (-) True CI01000027_08483034_08503082
CI01000027_08688706_08696073.mRNA mRNA upstream 4265 8688691 ~ 8697369 (-) True CI01000027_08688706_08696073
CI01000027_08701843_08702938.mRNA mRNA upstream 16356 8700782 ~ 8702938 (-) True CI01000027_08701843_08702938
CI01000027_08713799_08734144.mRNA mRNA upstream 29128 8713554 ~ 8734144 (-) True CI01000027_08713799_08734144
CI01000027_08820113_08821952.mRNA mRNA upstream 135593 8820019 ~ 8822352 (-) True CI01000027_08820113_08821952
CI01000027_08864430_08897266.mRNA mRNA upstream 179842 8864268 ~ 8897266 (-) True CI01000027_08864430_08897266
TU162851 other downstream 798056 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 1010336 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 1243914 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 1526107 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 1526292 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 1854354 10538780 ~ 10542148 (-) True G144365

Expression Profile