RNA id: TU163150


Basic Information

Item Value
RNA id TU163150
length 403
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G143615
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8709127 ~ 8709529 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCACTCTGATTGCTCTGCGGCTATGCAGCCCCACGCAGCAGAGTGATGCACTGTGTTGTGACACATTTCTCCCATAACCATTATTAAAATGTTGTGTGACTTGTGCCACAGTAGACCTTCTGTTGGCTCAGACCAGATGGGATAGCCCTTGTTGCCCTCGTGCATCGATGAGCCTTGGGCGCCCAACACCCTGTCGCTGGTTTGTGGTTTGTCCCTCCTCGGACCACTGTAAATTCTCACCCTGCTGACCAGGAGCAACCCACAAGCCTTGCAGTTGACCTAGTCACCTTGCCATAACAATCTGGCCCATGTCAAAGTTGCTCAGATCTTTATTCCTGCCCATTTCTCCTGCATCCAACACGTTGATTACAAGAATTGTCTGCTTACCATTGAATCTACCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163143 lncRNA downstream 24701 8684105 ~ 8684426 (-) True G143608
TU163138 lncRNA downstream 47321 8661587 ~ 8661806 (-) True G143603
TU163137 lncRNA downstream 47906 8660958 ~ 8661221 (-) True G143602
TU163136 lncRNA downstream 48614 8660060 ~ 8660513 (-) True G143601
TU163133 lncRNA downstream 51447 8657309 ~ 8657680 (-) True G143598
TU162998 lncRNA upstream 2274 8711803 ~ 8713014 (-) True G143467
TU163157 lncRNA upstream 29085 8738614 ~ 8738830 (-) True G143622
TU163158 lncRNA upstream 29318 8738847 ~ 8739070 (-) True G143623
TU163171 lncRNA upstream 54948 8764477 ~ 8764696 (-) True G143636
TU163187 lncRNA upstream 74882 8784411 ~ 8784631 (-) True G143652
CI01000027_08701843_08702938.mRNA mRNA downstream 6189 8700782 ~ 8702938 (-) True CI01000027_08701843_08702938
CI01000027_08688706_08696073.mRNA mRNA downstream 11758 8688691 ~ 8697369 (-) True CI01000027_08688706_08696073
CI01000027_08671118_08685781.mRNA mRNA downstream 23346 8671095 ~ 8685781 (-) True CI01000027_08671118_08685781
CI01000027_08595524_08646502.mRNA mRNA downstream 62625 8594938 ~ 8646502 (-) True CI01000027_08595524_08646502
CI01000027_08568349_08570750.mRNA mRNA downstream 138377 8567985 ~ 8570750 (-) True CI01000027_08568349_08570750
CI01000027_08713799_08734144.mRNA mRNA upstream 4025 8713554 ~ 8734144 (-) True CI01000027_08713799_08734144
CI01000027_08820113_08821952.mRNA mRNA upstream 110490 8820019 ~ 8822352 (-) True CI01000027_08820113_08821952
CI01000027_08864430_08897266.mRNA mRNA upstream 154739 8864268 ~ 8897266 (-) True CI01000027_08864430_08897266
CI01000027_08940113_08943539.mRNA mRNA upstream 230337 8939866 ~ 8943539 (-) True CI01000027_08940113_08943539
CI01000027_08946941_08955434.mRNA mRNA upstream 235784 8945313 ~ 8955434 (-) True CI01000027_08946941_08955434
TU162851 other downstream 823078 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 1035358 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 1268936 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 1551129 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 1551314 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 1829251 10538780 ~ 10542148 (-) True G144365

Expression Profile