RNA id: TU163157



Basic Information


Item Value
RNA id TU163157
length 217
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G143622
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8738614 ~ 8738830 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCAATATTAACTTTTGGTTTATTAAATTGATGAAAACAGTAGTATAATGAACCTGCAGTGTGTGTATTTATGGCTTATACCAGCAGGGGCTAACAAGGCCAGCGAAACTCTGACCCTTGTCTTTTTCGTGTCATTGTTTTCATGAACAAAACCCTATCATTTCACTCTCTGTCTCTTCCATACTATTTATCTACCTCGCTGGACTAGAGCGATCTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU162998 lncRNA downstream 25600 8711803 ~ 8713014 (-) True G143467
TU163150 lncRNA downstream 29085 8709127 ~ 8709529 (-) True G143615
TU163143 lncRNA downstream 54188 8684105 ~ 8684426 (-) True G143608
TU163138 lncRNA downstream 76808 8661587 ~ 8661806 (-) True G143603
TU163137 lncRNA downstream 77393 8660958 ~ 8661221 (-) True G143602
TU163158 lncRNA upstream 17 8738847 ~ 8739070 (-) True G143623
TU163171 lncRNA upstream 25647 8764477 ~ 8764696 (-) True G143636
TU163187 lncRNA upstream 45581 8784411 ~ 8784631 (-) True G143652
TU163195 lncRNA upstream 53159 8791989 ~ 8792712 (-) True G143660
TU163296 lncRNA upstream 191570 8930400 ~ 8935626 (-) True G143749
CI01000027_08713799_08734144.mRNA mRNA downstream 4470 8713554 ~ 8734144 (-) True CI01000027_08713799_08734144
CI01000027_08701843_08702938.mRNA mRNA downstream 35676 8700782 ~ 8702938 (-) True CI01000027_08701843_08702938
CI01000027_08688706_08696073.mRNA mRNA downstream 41245 8688691 ~ 8697369 (-) True CI01000027_08688706_08696073
CI01000027_08671118_08685781.mRNA mRNA downstream 52833 8671095 ~ 8685781 (-) True CI01000027_08671118_08685781
CI01000027_08595524_08646502.mRNA mRNA downstream 92112 8594938 ~ 8646502 (-) True CI01000027_08595524_08646502
CI01000027_08820113_08821952.mRNA mRNA upstream 81189 8820019 ~ 8822352 (-) True CI01000027_08820113_08821952
CI01000027_08864430_08897266.mRNA mRNA upstream 125438 8864268 ~ 8897266 (-) True CI01000027_08864430_08897266
CI01000027_08940113_08943539.mRNA mRNA upstream 201036 8939866 ~ 8943539 (-) True CI01000027_08940113_08943539
CI01000027_08946941_08955434.mRNA mRNA upstream 206483 8945313 ~ 8955434 (-) True CI01000027_08946941_08955434
CI01000027_08959339_08969831.mRNA mRNA upstream 219252 8958082 ~ 8969831 (-) True CI01000027_08959339_08969831
TU162851 other downstream 852565 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 1064845 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 1298423 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 1580616 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 1580801 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 1799950 10538780 ~ 10542148 (-) True G144365

Expression Profile