RNA id: TU163378


Basic Information

Item Value
RNA id TU163378
length 314
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G143818
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9457226 ~ 9457539 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCAGGATTTTTCTCCTTATAGTGGACTTACAGAACGAACGTGGTGCCAGTTCCGCTTTTTCCGTAAATTGAATAGGGAAGGCGTAGAACATTTAGCGTAAGCTTTTTGAAGAATACGGAATCGCGTTCTGGTGGAAGCACTTGTGATACGAACATTTGTGCCTATAAAGCATATACATTTTGATTTTTTTTTAGAAAATTACCGATTGTTTCGCTAGATAAGACCCTTATTCCTCGTCTGGTATCGTTTAAAGCCCTTTGAAGCTGCACTGAAACTGTCATTTTGACCTTCAACCGTTTGGAGACCATTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163377 lncRNA downstream 2333 9454235 ~ 9454893 (-) True G143817
TU163241 lncRNA downstream 32602 9423411 ~ 9424624 (-) True G143694
TU163373 lncRNA downstream 33884 9422917 ~ 9423342 (-) True G143814
TU163372 lncRNA downstream 34083 9422863 ~ 9423143 (-) False G143814
TU163371 lncRNA downstream 34083 9422917 ~ 9423143 (-) False G143814
TU163380 lncRNA upstream 21027 9478566 ~ 9478786 (-) True G143820
TU163402 lncRNA upstream 72607 9530146 ~ 9530858 (-) True G143830
TU163403 lncRNA upstream 74277 9531816 ~ 9532071 (-) True G143831
TU163405 lncRNA upstream 78827 9536366 ~ 9536634 (-) True G143833
TU163411 lncRNA upstream 88680 9546219 ~ 9546419 (-) True G143839
CI01000027_09437673_09445306.mRNA mRNA downstream 11678 9436243 ~ 9445548 (-) True CI01000027_09437673_09445306
CI01000027_09401652_09408536.mRNA mRNA downstream 48225 9401388 ~ 9409001 (-) True CI01000027_09401652_09408536
CI01000027_09341489_09346178.mRNA mRNA downstream 110563 9341443 ~ 9346663 (-) True CI01000027_09341489_09346178
CI01000027_09332854_09337620.mRNA mRNA downstream 118050 9332734 ~ 9339176 (-) True CI01000027_09332854_09337620
CI01000027_09319234_09326444.mRNA mRNA downstream 130439 9318811 ~ 9326787 (-) True CI01000027_09319234_09326444
CI01000027_09464510_09467490.mRNA mRNA upstream 6672 9464211 ~ 9467740 (-) True CI01000027_09464510_09467490
CI01000027_09472471_09475553.mRNA mRNA upstream 14813 9472352 ~ 9476152 (-) True CI01000027_09472471_09475553
CI01000027_09476738_09478257.mRNA mRNA upstream 18960 9476499 ~ 9478417 (-) True CI01000027_09476738_09478257
CI01000027_09504696_09522574.mRNA mRNA upstream 47063 9504602 ~ 9522837 (-) True CI01000027_09504696_09522574
CI01000027_09668229_09671091.mRNA mRNA upstream 209551 9667090 ~ 9671091 (-) True CI01000027_09668229_09671091
TU162851 other downstream 1571177 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 1783457 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 2017035 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 2299228 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 2299413 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 1081241 10538780 ~ 10542148 (-) True G144365

Expression Profile