RNA id: TU163380



Basic Information


Item Value
RNA id TU163380
length 221
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G143820
representative True

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9478566 ~ 9478786 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTAACATTTCTGGCAATGGAGGCCTTACTGAGCCATCGGATTTCATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAGGACTTACGGGTGTGGAACGACATGAGGGTGAGTAATAAATTACATAATTTTCATTTTTGGGTGAACTAACCCTTTAAGATTTTATTAATTTACATTAGGCTACTTTTCCAGGTCCAAAAATCCCACTTTTAAAATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163378 lncRNA downstream 21027 9457226 ~ 9457539 (-) True G143818
TU163377 lncRNA downstream 23673 9454235 ~ 9454893 (-) True G143817
TU163241 lncRNA downstream 53942 9423411 ~ 9424624 (-) True G143694
TU163373 lncRNA downstream 55224 9422917 ~ 9423342 (-) True G143814
TU163372 lncRNA downstream 55423 9422863 ~ 9423143 (-) False G143814
TU163402 lncRNA upstream 51360 9530146 ~ 9530858 (-) True G143830
TU163403 lncRNA upstream 53030 9531816 ~ 9532071 (-) True G143831
TU163405 lncRNA upstream 57580 9536366 ~ 9536634 (-) True G143833
TU163411 lncRNA upstream 67433 9546219 ~ 9546419 (-) True G143839
TU163455 lncRNA upstream 71155 9549941 ~ 9550328 (-) True G143852
CI01000027_09476738_09478257.mRNA mRNA downstream 149 9476499 ~ 9478417 (-) True CI01000027_09476738_09478257
CI01000027_09472471_09475553.mRNA mRNA downstream 2414 9472352 ~ 9476152 (-) True CI01000027_09472471_09475553
CI01000027_09464510_09467490.mRNA mRNA downstream 10826 9464211 ~ 9467740 (-) True CI01000027_09464510_09467490
CI01000027_09437673_09445306.mRNA mRNA downstream 33018 9436243 ~ 9445548 (-) True CI01000027_09437673_09445306
CI01000027_09401652_09408536.mRNA mRNA downstream 69565 9401388 ~ 9409001 (-) True CI01000027_09401652_09408536
CI01000027_09504696_09522574.mRNA mRNA upstream 25816 9504602 ~ 9522837 (-) True CI01000027_09504696_09522574
CI01000027_09668229_09671091.mRNA mRNA upstream 188304 9667090 ~ 9671091 (-) True CI01000027_09668229_09671091
CI01000027_09702760_09713076.mRNA mRNA upstream 223435 9702221 ~ 9713362 (-) True CI01000027_09702760_09713076
CI01000027_09714931_09721135.mRNA mRNA upstream 236090 9714876 ~ 9721135 (-) True CI01000027_09714931_09721135
CI01000027_09722965_09729563.mRNA mRNA upstream 243918 9722704 ~ 9730482 (-) True CI01000027_09722965_09729563
TU162851 other downstream 1592517 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 1804797 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 2038375 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 2320568 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 2320753 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 1059994 10538780 ~ 10542148 (-) True G144365

Expression Profile