RNA id: CI01000028_06199637_06208451.mRNA



Basic Information


Item Value
RNA id CI01000028_06199637_06208451.mRNA
length 1877
RNA type mRNA
GC content 0.45
exon number 5
gene id CI01000028_06199637_06208451
representative True

Chromosome Information


Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 6198701 ~ 6208993 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTGTGTGATATGTATTTAGTACTTATGGATGATTAAACATCCCAGCGGTAGATGCTACCCATCTCCTAAACACTGACGGATGGTGTTTTCGAAAATCCTGTAAACTTTCTGCACCCTCTTTATTTGTACATATTTTGTAAACATCATTTCATCAAAATAATGAGCTGTTAGTTCAGTTTGCATAAAATCTGCATCACTCAAACATGGCCAAAATCTGAAAACTTAAGACCTATTTTTATTTTTTTTCTCATTCTGATATATGTAACAGAACCAGACCCGAGAGAGATAAGCAGATGGTACGTTAACTGTTTATTGAGCGATATGCAGGGAACAAGCACAACAGGTAAGTTTCAGATGCAGATGCAAACAGTGGAATGAGATATAACTGGTAGCCTTTGTGTCTTTCAGGAGATTTTGACGAGAGATTGCCTAGGAAGATGGAGTTCACACAACTCAGTGCCAGTGAATAGTGATTCAGTTGAGGGAAATCACGAAAGGACTGAAGAGGTGAGGCGCTGGAGAGCAGGAGTAGAAACTGGAGATGATCACGAAGGACGAAGAAGTAGAAGACACTGGAGCTGACTGGTCTTATCAACCACAACCACACAACTTCCCCTCTGGCTGTCGTCCCGAACCTGCTTCCAGAACCTGGCTTTATCAGAACCACCGCTGCAGTCTGGCTTTGCAGGCTGCGTGTATGACAGAGAGAGCAGTGTGCATGTGGACCACTGTCTCTCAGTCTGAGCCTGTGACAGTCCAGCTTGTGGAGGAGCGCGCTCTCTTCATCTCTTCTCGCGTGTGTGTCCTGCAGAAACCCGACAGAACTGTAAACCTCATTAAACAAGGAACAAATAACAGTGGGGGCTTGGCTGAAGCAGGCAGCATCCATATTGCCCATGAGCGGAGACCCCACCCAACCACATTCACATGTGATGAATAAAACATGACATTGAGATTGTGCCTGGGCTGAGTGCAGCTGGGCAGTTCTGTTGACCCGTTTCAGAGAGCCACCGACAGGTTCGGACTAATTTGGGTCACTGTAAGCCCATATGAAAGAGGCACGTCAGTATCTACAGAGGATGAGTGAATCAGCAAGTCCAGAATGATCCAGCTTGGGTCCCTAGACTCCCCCAGCTGAGGGAAATATAAAGCAGGAACACGTTCAAAGGAAGTCAATGTTTATTCCCTCGGTATCTCTCTCTTTCTCTATCTCGCTCTATTTCTTTACCTCTCCGCCATTGTTGTGAACATGTGCGGATTTGTGGAACATATACATCTTTTTCCCATTCTTCCCTGTGCGAATTTTAAGCCACAAACTGAGGAACAAAATAGTCATATCTGCGCTCTCTCGAAGAAAGGAGTTTTATTTATGCAGAAATTGCAATTCATCTACAATGCAAATGCACAGCAAAGATAAAAAGATGACTGTTTACTTGTGTGTGGAAGGTAAAGATCTTGACCCACTCAAAGTTTGGCTGTTGTCGGTTCTGAGCGATTAGCATACGCGATCGCTCGCGGCCGTATATGGGTGTTTCTGTAGGTTCTAATGCCTACACGCTTTCTCTGAACAAAAAGGAAGCTTCCTGCCTTTTTCACCCTGCCATATCCTCTTCATCTCTCTCTTTCACAGCTTGTTTTGTTTGTCTGCAGGGACTTGCATGTATGTCTTCCAGATTCACACTTTCTAATGTTTTGTTTGCCCCCTTATGTATAATTTCTCTTGGTAGAGGTGGGTTGATTCACCTCTCCGCCCTAGGCAAGTGCCCTTTTTCTTTTTGAATGCCAAATATCTCCTCACCCACCCCCAAACCAAGCCTATGCCAACCCCACACTTCCTCCTAAAACCCGCCCTGAGGTACGAGGGTGTTTTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168855 lncRNA downstream 40614 6157850 ~ 6158087 (-) True G148629
TU168833 lncRNA downstream 159086 6039404 ~ 6039615 (-) True G148608
TU168811 lncRNA downstream 161103 6037005 ~ 6037598 (-) False G148589
TU168812 lncRNA downstream 161103 6037122 ~ 6037598 (-) True G148589
TU168815 lncRNA downstream 174902 6023385 ~ 6023799 (-) True G148592
TU168864 lncRNA upstream 5355 6214348 ~ 6214556 (-) True G148638
TU168872 lncRNA upstream 13621 6222614 ~ 6222917 (-) True G148646
TU168878 lncRNA upstream 24727 6233720 ~ 6234020 (-) True G148652
TU168887 lncRNA upstream 42221 6251214 ~ 6251517 (-) True G148661
TU168895 lncRNA upstream 63817 6272810 ~ 6273011 (-) True G148669
CI01000028_06092667_06094044.mRNA mRNA downstream 104106 6092188 ~ 6094595 (-) True CI01000028_06092667_06094044
CI01000028_06079297_06089526.mRNA mRNA downstream 109015 6079192 ~ 6089686 (-) True CI01000028_06079297_06089526
CI01000028_06025232_06034863.mRNA mRNA downstream 163806 6024412 ~ 6034895 (-) True CI01000028_06025232_06034863
CI01000028_05991041_05996372.mRNA mRNA downstream 202329 5990915 ~ 5996372 (-) True CI01000028_05991041_05996372
CI01000028_05958646_05968274.mRNA mRNA downstream 229949 5958334 ~ 5968752 (-) True CI01000028_05958646_05968274
CI01000028_06565728_06571617.mRNA mRNA upstream 355714 6564707 ~ 6572022 (-) True CI01000028_06565728_06571617
CI01000028_06681287_06690095.mRNA mRNA upstream 472175 6681168 ~ 6690168 (-) True CI01000028_06681287_06690095
CI01000028_06736522_06738241.mRNA mRNA upstream 527487 6736480 ~ 6738241 (-) True CI01000028_06736522_06738241
CI01000028_06756364_06785862.mRNA mRNA upstream 547350 6756343 ~ 6788590 (-) True CI01000028_06756364_06785862
CI01000028_06930121_06933901.mRNA mRNA upstream 720830 6929823 ~ 6934781 (-) True CI01000028_06930121_06933901
TU166214 other downstream 3752388 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 4038663 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 4087436 2097570 ~ 2111265 (-) True G146190
TU164620 other downstream 5723355 475313 ~ 475346 (-) True G144886
TU164586 other downstream 6062913 135392 ~ 135788 (-) False G144855
TU169615 other upstream 490520 6699513 ~ 6701240 (-) True G149329
TU169770 other upstream 761764 6971561 ~ 6971711 (-) True G149468
TU169776 other upstream 1020798 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 1316969 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 1317021 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631

Expression Profile