RNA id: CI01000028_07010842_07012858.mRNA



Basic Information


Item Value
RNA id CI01000028_07010842_07012858.mRNA
length 1616
RNA type mRNA
GC content 0.38
exon number 4
gene id CI01000028_07010842_07012858
representative True

Chromosome Information


Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 7009823 ~ 7012858 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAGTGCTCTAAAGCTGTGAACAGTCCTTCTCTCCTCCACTGCAATGAAGACTGTTGTGTTCACTTTGCTGGTTGTGGCTGTGGACGTTCGCGTCTCATCGTCTACCTGGGAAAGCACAAAAAGTCTGTTAATGAAACCACAGAGCAGCAGATCAGGGTGGAGAAGATGATTCCTCACCTGAAATATAATAATCAGCCTCATAACAATGATATCATGCTGATCAAGCTGAGAAAGCCTGCCATCTTCAACAAGTATGTAAAGCCAATCCCTCTGACAACCAGCTGCACTTCTGCAGGGGAGCAGTGCTTGGTTTCTGGATGGGGCAGAACTGGAGATGGCGCTGCTTCTGTCCTGCAGTGCTTGAATTTGCCTGTAGTCTCAAAGAGGCAGTGTAAGGGTGCATATGGTACAGTAATAACTAAAAACATGTTCTGTGCTGGATTCATGAAGGGAGGCAAAGACTCATGTCAGCAGCATGGCAAAATTAAGTACCCCATCATGTGGGTGTGCACATCACATGGAAAACATTCAAACCCTCAGAGTATTGACAACAAGGCCATCAGAAGATGTAATTTCTTACATACAGTAGCTAGTTGACTAAAATTCCCATTACAATGTTAGAATGTTATGGCTTAGCAGATCACATCTGTTGCCTCATATGCACATGGTTTGTACAGTCACAGAAACACTGTGTTGACTAGGCTATGTTTCAGCTTCTGAGGGGAAAACTGTCAAATGGTGACAGAAAACATGACAATTGGAAAAGATACCATTTCATTATTACTTTTATAGTCTGAAAAGTCCGTCCAGTATAAACTTAAGTCGCTAACAGTCTGCAATATTTATGAACAATGTTAAACGTGAAGCTAGATAACTTTAGATAGATTTAGTTTACCCACAGTTTAGAATGACTCAAGGATAACTATTGTGTGAAAAGCCCTTTTATTGGAAATGTCTGGTACAAATACTTGGCTTTGTTTCATTAATACAGTGTATACTTTTTTCTTTATTCACCCTGAAAGAAGGGAAGTGAAATGTGACAACATGCCCCATAGGTGGGGCACATTGTAACATGACCATATGACAGCTTAAAATGTTATCTGATCTAATCAAGGAAATATTCATGCCAAACTAAAATATTTTGTCAGTAAAAGACAATTATTATTTGTTTTTCATATTAGAAATTCAAATTTAAATAATTAAATAGCTTGACAATAAACACTGCAAAACACAGCTATACACAGCATTGGTCAAAACAATACAGGCAAATAGATGAAAAAACATATTCAGGCATTCAGAAAAACAGAGCTAAATAAAACACTCTCCTCCCTCCACTCATAGAACAGGAGATAAATAGACAAACATTTCTTGAAATAATATTTTCTGGATGTTCAGGTACTTCCTCTCAGTCTTTATTTGATTTGATTTCTTCCAAAGATTTCTGAATTTTGGCACAATTTTTTTCTCTATATATTGTCAGTATGAGTATGTCAGTCATGATTGACAGGCCAGTTTATGGTGACAGGAAAGAAGGCCTAAGTAGAACGAGTTTTGGGCCATTAAGTAAAAGCAACGAGGAGGAGGACCCTGAAGAGCATGACAGGGGACGAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169785 lncRNA downstream 40191 6969240 ~ 6969632 (-) False CI01000028_06969947_06983352
TU169771 lncRNA downstream 40677 6965064 ~ 6969146 (-) False CI01000028_06969947_06983352
TU169832 lncRNA downstream 55216 6954397 ~ 6954607 (-) True G149528
TU169828 lncRNA downstream 92670 6916920 ~ 6917153 (-) True G149524
TU169826 lncRNA downstream 93541 6916043 ~ 6916282 (-) True G149522
TU169863 lncRNA upstream 64131 7076989 ~ 7116309 (-) True G149554
TU169877 lncRNA upstream 92798 7105656 ~ 7112425 (-) True G149567
TU169782 lncRNA upstream 158078 7170936 ~ 7228043 (-) True G149480
TU169919 lncRNA upstream 182283 7195141 ~ 7195551 (-) True G149606
TU169945 lncRNA upstream 239936 7252794 ~ 7253110 (-) True G149632
CI01000028_06969947_06983352.mRNA mRNA downstream 25739 6968349 ~ 6984084 (-) False CI01000028_06969947_06983352
CI01000028_06937034_06956621.mRNA mRNA downstream 53202 6936818 ~ 6956621 (-) True CI01000028_06937034_06956621
CI01000028_06930121_06933901.mRNA mRNA downstream 75042 6929823 ~ 6934781 (-) True CI01000028_06930121_06933901
CI01000028_06756364_06785862.mRNA mRNA downstream 221233 6756343 ~ 6788590 (-) True CI01000028_06756364_06785862
CI01000028_06736522_06738241.mRNA mRNA downstream 271582 6736480 ~ 6738241 (-) True CI01000028_06736522_06738241
CI01000028_07102169_07103695.mRNA mRNA upstream 89269 7102127 ~ 7103717 (-) True CI01000028_07102169_07103695
CI01000028_07124749_07145384.mRNA mRNA upstream 109857 7122715 ~ 7147109 (-) True CI01000028_07124749_07145384
CI01000028_07148224_07150338.mRNA mRNA upstream 135036 7147894 ~ 7150492 (-) True CI01000028_07148224_07150338
CI01000028_07189923_07200164.mRNA mRNA upstream 176418 7189276 ~ 7200257 (-) True CI01000028_07189923_07200164
CI01000028_07209430_07220674.mRNA mRNA upstream 195351 7208209 ~ 7220801 (-) True CI01000028_07209430_07220674
TU169770 other downstream 37926 6971561 ~ 6971711 (-) True G149468
TU169615 other downstream 308583 6699513 ~ 6701240 (-) True G149329
TU166214 other downstream 4563510 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 4849785 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 4898558 2097570 ~ 2111265 (-) True G146190
TU169776 other upstream 216933 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 513104 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 513156 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631
TU170277 other upstream 961710 7974568 ~ 8012707 (-) False G149923
TU170278 other upstream 998938 8011796 ~ 8024244 (-) False G149923

Expression Profile