RNA id: CI01000028_09224491_09231508.mRNA


Basic Information

Item Value
RNA id CI01000028_09224491_09231508.mRNA
length 5163
RNA type mRNA
GC content 0.48
exon number 6
gene id CI01000028_09224491_09231508
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 9223805 ~ 9231845 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAGTGGGGTTGTTTATTCAATCNCGGAGGACGTCCAGAGCATGGAGGATCGCGGATGAGGTGGTCAGCGTGCGACTGATTGGTTTTCCAGTGTGCCAGGCGTGGCGGCTGCTAAGAAGATCGGATCAGACTGACGCGTTTCCATCTGCTAACGTGTTGGCTTCCTGGATTTCATGGCTGCATCCCAGGAACTGTGCATTAGTGTGAGGGTGTGTCTAAGGTACTGAAAAAAAAAAAAGACTGAGAAAGCGGGACAAGTTTTGCACCAAGGACATTAATCTCTAACTGAGTTGAGTTAATTCCGAGTTAATGCTTTTTGACCTACTTATGTAGAAAATGTCTGACTCTGACGAACTGCCTGAAGAGAGCGTACAAGTCCCTGTTGTTGGGGCTGTGGGAAATGATGTCATAGAGCAAATGAAGGGTCAAATTCAAGAGTTAAGCAATTGGAGGAACGATACTCTAGCCAATAGGGCTGTTGTTGGGGGTAACACAACCCGCTCTTACATTTATGTTCCTCGTGAACGCCAGGTTCAACCTTTTAGTGGGGAGTATAACAAAGATGGAAGGTCTGTAGAGGAGTTTATTGAGGAGGTAGAAAGGGTTCTACGGGCCAGAGACCAGACACAAGAAGAACAGCTGGACTTTATTATCTCACTTTTGCGGGGGCCTGCACTGGAAGAGGTAATTTCCCGGCAGGACAAGCGAATAAGTGAGCAAGAGCAGACTATTTCAGAGCTCACTAAGGTGGTCAAAGAGTTGACTGCGCAGCGGTTTACAGAAAAGGGAGAACCTATCTGTTTCAGGTGCAACGGGGTTGGGCATATCGCTAGACGCTGCACTGTCAGTACTATTACTGAGGAGTTTTTCCGAGAGCATCTGTTTGGGGATGAGAGTGATGTGTTGTCCACTTCTGGCTGGCTGAAGATCACAGCAGCCAACGGTTTAGACATTCCCTATTTGGGTTATATGGAGCTGGATGTGGAGGTTATGGGGATGACCTTGCCCGAGTGTGGGTTCTTGATCGTGAAAGAATCTCCTAGCCCATCGTCTGTGGCTGTGCTCATCGGAATGAACATTATCAATGGTCACAGTGAGGGTTCGTCCTGCGAAGTAAGGTTTCAGCGAATCTCTGCGGACACAGAACAGGTCACTATGGGTGGAGGTCCTGGTTCTCTGCCTCAGGCCCAGTCAGTCTTGGATTACGTCAACATGGGGGGCACGGCTGAGCAGCGGGTTCAGTTAAAAGCTCTGCTGGGCAAGTATTCAAGTGTGTTTGCCCTGGAGGACGATGATTTGGGTTATACAGATAAGGTTCGGCACGAGATACATCTGACTGATGACATACCAGTGAATCAGCCGTACCGACGAATTCCCCCAAATCAGTATCAAGAGGTTAGAAAGCACATAACTAAGTTACTGAAGAAGGGTGTCATTCAGGAGAGTGTAAGTGCTTATGCCTCGCCTGTGGTACTGGTGCGCAAAGCTGATGGGTCGACACGGTTGTGCGTAGATTATCGCAAACTCAATGCCAAGACGAGGCGTGACGCATTTCCGCTACCCAGAATTGACGAGAGCTTTGATGCCCTCAGGGGAGCGAAGTTCTTCTCAATTGTGGACTTGGCCTCTGGGTATCATCAGATCGCGGTGAGTGACCGTGATAGGGCCAAGACGGCGTTCACCACACCTTTTGGTTTATTTGAGTACCGGAGGATGCCGTTTGGGGTCTGTAATGGACCGTCGACCTTTCAGCGGCTGATGCAGGCTGTTATGAGCGACTTGATCTTCCAGGTGTCAGCGCAAGGGATTTCTCCTGACCCAGACAAGGTTGCTGCAGTCAGTAATTGGAAGACCCCAGAAACCATCAAGGAGTTGAGGTCATTTCTAGGGTTTTGCAGCTATTATAGGAAGTTCGTCGAGGGCTTCTCGAAGATAGCTGGACCCTTACATGACCTAGTAAATGCTTGCTTGAGTGAAGGCAGGTGTGTAAGGAGTGGTCGTCACTTTAGCACTCTGTGGTCTGCTGAATGTGACCATGCATTCAATCAGTTAAAGAGGAAGCTGACGACAGCACCTGTGCTTGGTTTTGCAGACTTCACTTGTCCTTTCATTCTCGAAACTGATGCAAGCCAGAATGGCTTAGGAGCCGTGCTGTACCAGAAACAGGGAGATAAGAAGAGGGTCATTGCGTATGCCAGCCATAGGTTGTGTAACGCAGAGCGAAATGATCGCAATTACAGTAGCATAAAGCTCGAGCTACTGGCCCTTAAGTGGGCTGTAGTCGAGAAATTTCGTGGCTACTTACTTGGGTCTTGGTTCGAGGTGATTACAGATAATAATCCGCTCTGTCACTTGCAAACTGCCAAGTTAGGAGTGATCGAACAGAGATGGGTAGCACAGCTGTCGGTCTTTAACTTCGAGGTGAAGTACAGACCGGGCAAGAGTAACGCTGCAGCTGATGCTCTGTCTAGGCAGGAGTTTGCAGGGGAGCCTGAACCTGATCCAGACGCTGACTGGGATGAGTGTATAGCGATTTGCGGTGAGATAAGGCGAGGTACCACCTTGGAACCTGAGCTGGCATTGAAGGGTGTTGAATGCAGCAGATTGAGGCAAATTCGTGCATTGGAGGCTGGAGAAGAAGCTATCTCTACTCTCCAAGGTAACACTCATACATTTCCCGGATACACCAGCGAACAGTTGGTTGAGTTCCAGAAAAGTGACCCTGTTCTGCGGGTGTTTCGAGGGTTCTGGGATAAGAAAAAGAAACCAGTTCACCTGGAAAGACAGTCTCTGTCCAGGTCTGTGAAATGCCTTCTGAAACAGTGGAGCCTAATAAAAGAACGGAATGGGTTGCTGTATCGAGTAGTAGATGATCCTTCTGAGGAGAGCTGCTGGCAACTGTTGTTGCCGGGGTGTTTAAAGGAACAAGTTCTGCGAAGTGTGCACGACGATCTGGGGCACCAGGGCATTGAACGGACGTTGGGGTTGTTGAAGCAGAGGTGTTTTCGGTCCGGTATGTATGAGGATGTGGAGGAATGGGTAAAGAAGTGTCAACGGTGCATCCTCACAAAGATGCCTCAGCCCAAAGTTCGTGCCCCTGTGAGAGCATTTTTGGCTTCCAGACCCCTGGAAGTGATTGCGGTGGACTTCACAGTCTTAGAGCCTGCTTCTGATGGGCGTGAAAATGTTTTGGTTGTTACCGACGTTTTCACAAAGTTTACACAGGCGTTTCCCACAAAAGATCAAAAGGCCGATACCACAGCAAAGGTCTTGTTAAAGGAGTGGTTTATGAAGTACGGTGTCCCGGAGAGGTTGCACTCAGATCAAGGTCGAAACTTTGAAAGTGAGGTAATCGCTGAGCTGTGCAGACTCTATGGAGTGAAAAAGACCCGTACGACCCCTTATAGGCCACAGGGAAATGTTCAATGTGAACGGTACAACCGAACACTTCACAACCTGTTACGTACATTACCACCAGAACGTAAGCGGCGTTGGCCCGAGTACTTGCCGGAGTTAGTCCATGCGTATAATGTGACTCCGCATGCAACTACAGGGTTTTCCCCTTATTATCTTCTTTTTGGGGTACAACCACATCTGCCCATTGATGCGTTGTTAGGTGGTGAGGAAGTCTCCGAGCGGAAACAAGACTGGTTGTCTGTGCATCAAGAGAGGCTGAGATATGCCCATGAGAAGGCTAGGGAGTATTCAGAAGAGAAAGCTTTAGAGAGAGTGACTCGTCTGAATGAAAAGACATTTTGTCCCCAGGTCAGTGTGGGCGAGTTGGTATATCTGCGCCAGCGGCCTCCAGGCAGGAACAAGATTCAAGATGCCTGGAGCCCGACTGTGTACCGAGTTGTGGAAATAGTAGGCACAACTTACACTGTGGAACCTTTAGAGGGAGGGCCGTCGAAGAGGGTTCACAGGTCGGAGTTGCATCCAGGTGCCGTGCCAACTCCACGACCTAGGAGTAAGGAAAAATCTCAGTCAGATATAAAGCCTGTCATTATGGATGAGAATGAGATGTCTGAGCCAGATTTTGTGGTAGTAGAGGAGGTTGTGCAACCATCTGTGAGGGTGGCCGCAAACACTCCAGTGGACTCAGAGGCACCAGTTACTTCGGAGTTGGGAGGTGACAGCTCTGAAGGTATCCAAGTACAAGCATCAGCAGATACTGGTAGGGACTCTGCACAATATGATGGTGTTGTTCTGAGGGCTACAGGTGAACGTGGCCAGTCGCAGGAGCTAGAGACTGGTGACATGCGTAATACTGATTTTAGAGAAGTACCAGTTCCAGCTGTGCGCAGAAGCAAACGGTCTACTGCGGGTGTTCACACAAATCCTTTTCATGCACCCAGGTCTGCTTGTCATGCAGTGAGTGTCAGCACAGATATGGTGTCTCAAGTGTTGACCAGTATTGGCACCGCATTGTTCGAGAAGGCATTACAAGGTGCCATGAATGCCGAAATTGGTGATTGAGTGAGTCATCGAGGACGCTGACTTATTGCAGGGGAGAATGTAACCGGGTGGTAATTAACCTTGAAATCTATATCTCTCCTTGCATGTTAAATCTCTCCTTGCATGTTAAAAATGTATTATTTTATTATTCTCATTATGTTCAGTGTATTAAGTTATGATAAACAGTGGTTACCTGTATTTTCCTGGAGTGGTCAGCAGGTGGCACTGTGTGTGTTGCGTATGAGACAGTGCGCATGCGCTTTCACTCTGGGATATCTGTTGAGTTTGCAAGCAGTGCGAGCGACGCGTTCTCTGGAAGTTTTTGTGATCATCCACGGTGTACAACATATGTTGGGGATTTCGGCCTTTGTAAAGTGTACTTGGTGTTATGTAGGAGCGCATCGTGATTATTCCCACTGCCGTATTGTGTTGTAACATTTTGATATTGTGTTGCATTACTTGTAAGGGTTTTATTTTCTATTATTTGCACTGAGATTTTTGTAATTTTCCTATTCTCTTGCATTTTGGAAATGACACTGTAGAGCTATGAAGGTTTAATTTGTGTCATCAGCTGTGTGAAAGTGCTCATTTTGTTTATCTAAATATTGTTTCGCTTTTACTGATCTTTTTGTGAACTTTCTTCTCAATTAAGTTGAGAGGTCATTTTTGATAGTGAATCATTTTCTCGAAAACAGTAAATGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171332 lncRNA downstream 3179 9220417 ~ 9220626 (-) True G150877
TU171331 lncRNA downstream 4600 9218974 ~ 9219205 (-) True G150876
TU171324 lncRNA downstream 11018 9212588 ~ 9212787 (-) True G150869
TU171322 lncRNA downstream 12329 9211217 ~ 9211476 (-) True G150867
TU171288 lncRNA downstream 27848 9138374 ~ 9195957 (-) True G150833
TU171350 lncRNA upstream 2379 9234224 ~ 9234516 (-) True G150885
TU171351 lncRNA upstream 2993 9234838 ~ 9235047 (-) True G150886
TU171359 lncRNA upstream 10293 9242138 ~ 9299716 (-) True G150894
TU171392 lncRNA upstream 57138 9288983 ~ 9290591 (-) False G150926
TU171393 lncRNA upstream 57138 9288983 ~ 9290591 (-) True G150926
CI01000028_09159785_09161996.mRNA mRNA downstream 60989 9159749 ~ 9162816 (-) True CI01000028_09159785_09161996
CI01000028_09097962_09100854.mRNA mRNA downstream 122951 9097962 ~ 9100854 (-) True CI01000028_09097962_09100854
CI01000028_09035121_09057360.mRNA mRNA downstream 165840 9034579 ~ 9057965 (-) True CI01000028_09035121_09057360
CI01000028_09019298_09021471.mRNA mRNA downstream 200715 9017345 ~ 9023090 (-) True CI01000028_09019298_09021471
CI01000028_08879941_08885561.mRNA mRNA downstream 338102 8879841 ~ 8885703 (-) True CI01000028_08879941_08885561
CI01000028_09326092_09330464.mRNA mRNA upstream 94002 9325847 ~ 9330507 (-) True CI01000028_09326092_09330464
CI01000028_09331581_09331760.mRNA mRNA upstream 99494 9331339 ~ 9331760 (-) False CI01000028_09331581_09331760
CI01000028_09340262_09347554.mRNA mRNA upstream 108104 9339949 ~ 9347720 (-) True CI01000028_09340262_09347554
CI01000028_09449656_09453949.mRNA mRNA upstream 217258 9449103 ~ 9453949 (-) True CI01000028_09449656_09453949
CI01000028_09463027_09468717.mRNA mRNA upstream 230529 9462374 ~ 9468717 (-) True CI01000028_09463027_09468717
TU170727 other downstream 530062 8693398 ~ 8693743 (-) True G150328
TU170278 other downstream 1199561 8011796 ~ 8024244 (-) False G149923
TU170277 other downstream 1211098 7974568 ~ 8012707 (-) False G149923
TU169985 other downstream 1688062 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU171580 other upstream 245000 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746

Expression Profile