RNA id: TU169826


Basic Information

Item Value
RNA id TU169826
length 240
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G149522
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 6916043 ~ 6916282 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACAGTGTCATGTTGCCTTTTCCTAGCCTCTACTGATCTCTGCGTCAATCATTTACTGTCCAAAGGCCGGAGGCTGTAACGATGATACCATGTTCTATCCTCTGATCTTTATCACGCATTGAAATGATAGCCAGATATGAGGATCTGATAAGCATTTGCTTCTTGTGCTCATTCCCCAGGAAAACTGTGTTGTGCAGGTGTTTAATCAGCCTAGGTGAGATGTCACGCACACATGGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169824 lncRNA downstream 622 6915155 ~ 6915421 (-) True G149520
TU169823 lncRNA downstream 965 6914808 ~ 6915078 (-) True G149519
TU169818 lncRNA downstream 8768 6906616 ~ 6907275 (-) True G149514
TU169816 lncRNA downstream 10535 6905241 ~ 6905508 (-) True G149512
TU169815 lncRNA downstream 11261 6904568 ~ 6904782 (-) True G149511
TU169828 lncRNA upstream 638 6916920 ~ 6917153 (-) True G149524
TU169832 lncRNA upstream 38115 6954397 ~ 6954607 (-) True G149528
TU169771 lncRNA upstream 48782 6965064 ~ 6969146 (-) False CI01000028_06969947_06983352
TU169785 lncRNA upstream 52958 6969240 ~ 6969632 (-) False CI01000028_06969947_06983352
TU169839 lncRNA upstream 75798 6992080 ~ 7053464 (-) True G149535
CI01000028_06756364_06785862.mRNA mRNA downstream 127453 6756343 ~ 6788590 (-) True CI01000028_06756364_06785862
CI01000028_06736522_06738241.mRNA mRNA downstream 177802 6736480 ~ 6738241 (-) True CI01000028_06736522_06738241
CI01000028_06681287_06690095.mRNA mRNA downstream 225875 6681168 ~ 6690168 (-) True CI01000028_06681287_06690095
CI01000028_06565728_06571617.mRNA mRNA downstream 344021 6564707 ~ 6572022 (-) True CI01000028_06565728_06571617
CI01000028_06199637_06208451.mRNA mRNA downstream 707050 6198701 ~ 6208993 (-) True CI01000028_06199637_06208451
CI01000028_06930121_06933901.mRNA mRNA upstream 13541 6929823 ~ 6934781 (-) True CI01000028_06930121_06933901
CI01000028_06937034_06956621.mRNA mRNA upstream 20536 6936818 ~ 6956621 (-) True CI01000028_06937034_06956621
CI01000028_06969947_06983352.mRNA mRNA upstream 52067 6968349 ~ 6984084 (-) False CI01000028_06969947_06983352
CI01000028_07010842_07012858.mRNA mRNA upstream 93541 7009823 ~ 7012858 (-) True CI01000028_07010842_07012858
CI01000028_07102169_07103695.mRNA mRNA upstream 185845 7102127 ~ 7103717 (-) True CI01000028_07102169_07103695
TU169615 other downstream 214803 6699513 ~ 6701240 (-) True G149329
TU166214 other downstream 4469730 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 4756005 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 4804778 2097570 ~ 2111265 (-) True G146190
TU164620 other downstream 6440697 475313 ~ 475346 (-) True G144886
TU169770 other upstream 54475 6971561 ~ 6971711 (-) True G149468
TU169776 other upstream 313509 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 609680 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 609732 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631
TU170277 other upstream 1058286 7974568 ~ 8012707 (-) False G149923

Expression Profile