RNA id: TU169863


Basic Information

Item Value
RNA id TU169863
length 272
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G149554
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 7076989 ~ 7116309 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAACATATTATTAATAAACTGTTATGCAGATGTACACAGGGATTCTCTTTGTGCCGTGAACTTTTCAATGCGCAGCGCTGTGACTCCATATTGCTTTAAGCACATCACTCTGCACCCGGGATGCGCATAAGCGGTTTGTGCTGCTGTTTTGAAGCGTTTCATATTATCAGCATTTTACATACTGAAAGATTATTAATAGCCTATTTTGTTCTGTCATATCTATCATATCTTGTTGCCCCATTAAAAAGCTGCACAATAAATTTAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169839 lncRNA downstream 23525 6992080 ~ 7053464 (-) True G149535
TU169785 lncRNA downstream 107357 6969240 ~ 6969632 (-) False CI01000028_06969947_06983352
TU169771 lncRNA downstream 107843 6965064 ~ 6969146 (-) False CI01000028_06969947_06983352
TU169832 lncRNA downstream 122382 6954397 ~ 6954607 (-) True G149528
TU169828 lncRNA downstream 159836 6916920 ~ 6917153 (-) True G149524
TU169782 lncRNA upstream 54627 7170936 ~ 7228043 (-) True G149480
TU169919 lncRNA upstream 78832 7195141 ~ 7195551 (-) True G149606
TU169945 lncRNA upstream 136485 7252794 ~ 7253110 (-) True G149632
TU169775 lncRNA upstream 158183 7274492 ~ 7277512 (-) True G149473
TU169950 lncRNA upstream 177283 7293592 ~ 7293796 (-) True G149637
CI01000028_07010842_07012858.mRNA mRNA downstream 64131 7009823 ~ 7012858 (-) True CI01000028_07010842_07012858
CI01000028_06969947_06983352.mRNA mRNA downstream 92905 6968349 ~ 6984084 (-) False CI01000028_06969947_06983352
CI01000028_06937034_06956621.mRNA mRNA downstream 120368 6936818 ~ 6956621 (-) True CI01000028_06937034_06956621
CI01000028_06930121_06933901.mRNA mRNA downstream 142208 6929823 ~ 6934781 (-) True CI01000028_06930121_06933901
CI01000028_06756364_06785862.mRNA mRNA downstream 288399 6756343 ~ 6788590 (-) True CI01000028_06756364_06785862
CI01000028_07124749_07145384.mRNA mRNA upstream 6406 7122715 ~ 7147109 (-) True CI01000028_07124749_07145384
CI01000028_07148224_07150338.mRNA mRNA upstream 31585 7147894 ~ 7150492 (-) True CI01000028_07148224_07150338
CI01000028_07189923_07200164.mRNA mRNA upstream 72967 7189276 ~ 7200257 (-) True CI01000028_07189923_07200164
CI01000028_07209430_07220674.mRNA mRNA upstream 91900 7208209 ~ 7220801 (-) True CI01000028_07209430_07220674
CI01000028_07236259_07242539.mRNA mRNA upstream 119890 7236199 ~ 7242940 (-) True CI01000028_07236259_07242539
TU169770 other downstream 105092 6971561 ~ 6971711 (-) True G149468
TU169615 other downstream 375749 6699513 ~ 6701240 (-) True G149329
TU166214 other downstream 4630676 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 4916951 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 4965724 2097570 ~ 2111265 (-) True G146190
TU169776 other upstream 113482 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 409653 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 409705 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631
TU170277 other upstream 858259 7974568 ~ 8012707 (-) False G149923
TU170278 other upstream 895487 8011796 ~ 8024244 (-) False G149923

Expression Profile