RNA id: TU169919


Basic Information

Item Value
RNA id TU169919
length 272
lncRNA type intronic
GC content 0.29
exon number 2
gene id G149606
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 7195141 ~ 7195551 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAACTCATGAATAAATGGTTCACATGTGTTCACTTTACATTAAGGTGCACTTTCACAGGTTATTAATGTTTATAACTCATTAATAAATGGTTCACGTGTGTTCACTTTACATTAAGGTTCACTTTCACAGGTTATTAATGTTTATAACTCATTAATAAATGGTTCACAGGTTTCCACTTTACATTAAGTTTCACTTTCACAGGTTATTAATGTTTATAACTCATTAATAAATGGTTCACATGTGTTCACTTTACATTAAGGTTCACTTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169863 lncRNA downstream 78832 7076989 ~ 7116309 (-) True G149554
TU169877 lncRNA downstream 82716 7105656 ~ 7112425 (-) True G149567
TU169839 lncRNA downstream 141677 6992080 ~ 7053464 (-) True G149535
TU169785 lncRNA downstream 225509 6969240 ~ 6969632 (-) False CI01000028_06969947_06983352
TU169771 lncRNA downstream 225995 6965064 ~ 6969146 (-) False CI01000028_06969947_06983352
TU169945 lncRNA upstream 57243 7252794 ~ 7253110 (-) True G149632
TU169775 lncRNA upstream 78941 7274492 ~ 7277512 (-) True G149473
TU169950 lncRNA upstream 98041 7293592 ~ 7293796 (-) True G149637
TU169769 lncRNA upstream 129249 7324800 ~ 7326970 (-) True G149467
TU169974 lncRNA upstream 176486 7372037 ~ 7373033 (-) True G149657
CI01000028_07148224_07150338.mRNA mRNA downstream 44649 7147894 ~ 7150492 (-) True CI01000028_07148224_07150338
CI01000028_07124749_07145384.mRNA mRNA downstream 48032 7122715 ~ 7147109 (-) True CI01000028_07124749_07145384
CI01000028_07102169_07103695.mRNA mRNA downstream 91424 7102127 ~ 7103717 (-) True CI01000028_07102169_07103695
CI01000028_07010842_07012858.mRNA mRNA downstream 182283 7009823 ~ 7012858 (-) True CI01000028_07010842_07012858
CI01000028_06969947_06983352.mRNA mRNA downstream 211057 6968349 ~ 6984084 (-) False CI01000028_06969947_06983352
CI01000028_07209430_07220674.mRNA mRNA upstream 12658 7208209 ~ 7220801 (-) True CI01000028_07209430_07220674
CI01000028_07236259_07242539.mRNA mRNA upstream 40648 7236199 ~ 7242940 (-) True CI01000028_07236259_07242539
CI01000028_07257403_07298334.mRNA mRNA upstream 61626 7257177 ~ 7298334 (-) False CI01000028_07257403_07298334
CI01000028_07328793_07405548.mRNA mRNA upstream 132771 7328322 ~ 7406679 (-) True CI01000028_07328793_07405548
CI01000028_07424181_07428224.mRNA mRNA upstream 228414 7423965 ~ 7428549 (-) True CI01000028_07424181_07428224
TU169770 other downstream 223244 6971561 ~ 6971711 (-) True G149468
TU169615 other downstream 493901 6699513 ~ 6701240 (-) True G149329
TU166214 other downstream 4748828 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 5035103 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 5083876 2097570 ~ 2111265 (-) True G146190
TU169776 other upstream 34240 7229791 ~ 7232783 (-) True G149474
TU169985 other upstream 330411 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 330463 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631
TU170277 other upstream 779017 7974568 ~ 8012707 (-) False G149923
TU170278 other upstream 816245 8011796 ~ 8024244 (-) False G149923

Expression Profile