RNA id: TU170008


Basic Information

Item Value
RNA id TU170008
length 442
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G149687
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 7569948 ~ 7618064 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCTGTGTGACAAGGTGTACAGAAAACAAGCTAAAAAAAACCCAGATCCAAAAACCCAGAAGTTTTTATAAGCTGTCGACCCAAAAAACGAGCGTTTAAGGACTAAAAAGTGGATACAGGCGATTGAGACAGAGCACGACATGTCATATTACTATGAGAACTACGCCCACTGCAGGGTAACGTAATCAGCGACAGGAAATACAATATATAAAACTGACATTTGGATATTTGACTTAACAGTGACAAAATGTTTACTGCACACGTAGGCTTACTGAGTGTCAGGATCCCAAAATGTACCCATTCCTCCTGCTGATGCTTCACGTCTTATTGCCTGTATCGACTTTTGTCTCCTTAAAGGCTGGCTTTTACGGTTCGGTAGCTTATAAAAACTTAGTTCTGGGTTTTTTTTAGCTTGTTTGCTGTACACCTTGTAACACAGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170052 lncRNA downstream 13038 7556380 ~ 7556910 (-) True G149726
TU170043 lncRNA downstream 45523 7524146 ~ 7524425 (-) True G149720
TU170027 lncRNA downstream 48643 7520686 ~ 7521305 (-) True G149704
TU170037 lncRNA downstream 62899 7506588 ~ 7507049 (-) True G149714
TU170036 lncRNA downstream 65977 7503771 ~ 7503971 (-) True G149713
TU170005 lncRNA upstream 21150 7639214 ~ 7651417 (-) True G149684
TU170066 lncRNA upstream 40710 7658774 ~ 7659079 (-) True G149738
TU170103 lncRNA upstream 96651 7714715 ~ 7715050 (-) True G149768
TU170104 lncRNA upstream 97475 7715539 ~ 7715993 (-) True G149769
TU170108 lncRNA upstream 103533 7721597 ~ 7721870 (-) True G149773
CI01000028_07527725_07535631.mRNA mRNA downstream 34317 7526150 ~ 7535631 (-) False CI01000028_07527725_07535631
CI01000028_07424181_07428224.mRNA mRNA downstream 141399 7423965 ~ 7428549 (-) True CI01000028_07424181_07428224
CI01000028_07328793_07405548.mRNA mRNA downstream 163269 7328322 ~ 7406679 (-) True CI01000028_07328793_07405548
CI01000028_07257403_07298334.mRNA mRNA downstream 271614 7257177 ~ 7298334 (-) False CI01000028_07257403_07298334
CI01000028_07236259_07242539.mRNA mRNA downstream 327008 7236199 ~ 7242940 (-) True CI01000028_07236259_07242539
CI01000028_07627976_07631457.mRNA mRNA upstream 9708 7627772 ~ 7631539 (-) True CI01000028_07627976_07631457
CI01000028_07632826_07637377.mRNA mRNA upstream 14543 7632607 ~ 7638167 (-) True CI01000028_07632826_07637377
CI01000028_07643341_07644823.mRNA mRNA upstream 24153 7642217 ~ 7645416 (-) False CI01000028_07643341_07644823
CI01000028_07885954_07890507.mRNA mRNA upstream 266560 7884624 ~ 7890507 (-) True CI01000028_07885954_07890507
CI01000028_08209464_08209781.mRNA mRNA upstream 589668 8207732 ~ 8209781 (-) False CI01000028_08209464_08209781
TU169985 other downstream 34205 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other downstream 34205 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631
TU169776 other downstream 337165 7229791 ~ 7232783 (-) True G149474
TU169770 other downstream 598051 6971561 ~ 6971711 (-) True G149468
TU169615 other downstream 868708 6699513 ~ 6701240 (-) True G149329
TU170277 other upstream 356504 7974568 ~ 8012707 (-) False G149923
TU170278 other upstream 393732 8011796 ~ 8024244 (-) False G149923
TU170727 other upstream 1075334 8693398 ~ 8693743 (-) True G150328
TU171580 other upstream 1858781 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746

Expression Profile