RNA id: TU170727


Basic Information

Item Value
RNA id TU170727
length 346
RNA type TUCP
GC content 0.54
exon number 1
gene id G150328
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 8693398 ~ 8693743 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAGCCCTCCAGAACCAGCCCACAAACCCATGCTCCTGGAAAATTCCCGGCTCACCCTTTCAGAACGGCAGAGGCAGCTGACCCAGAATCTGTGCCTGTACTGTGCTTCTCCTGGGCATGTAATCTCCACATGCCCAATTCGTCCTCCTCGTCCCATGGTGAGTGCCATCATTCCCTCGATAACAAAGATGAAACCACTCACCACTGTTGTAAACCTTACTGCTGCTGATGTTTCCCTTCCAGTGGTCGCACTCCTCGATTCTGGGTCAGCTGTCAACTTTATCTCCGGTGCCCTCTGCCAGCAACTCAAGCTCAAGACCACGGCCACGCCGTCTACCTACCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170712 lncRNA downstream 34674 8657945 ~ 8658724 (-) False G150315
TU170713 lncRNA downstream 34674 8658077 ~ 8658724 (-) True G150315
TU170715 lncRNA downstream 36783 8654275 ~ 8656615 (-) True G150316
TU170706 lncRNA downstream 40325 8652662 ~ 8653073 (-) True G150313
TU170700 lncRNA downstream 46110 8647086 ~ 8647288 (-) True G150307
TU170783 lncRNA upstream 52973 8746716 ~ 8746920 (-) True G150368
TU170955 lncRNA upstream 175873 8869616 ~ 8869891 (-) True G150524
TU170999 lncRNA upstream 267182 8960925 ~ 8964273 (-) True G150568
TU171044 lncRNA upstream 348593 9042336 ~ 9042797 (-) True G150610
TU171288 lncRNA upstream 444631 9138374 ~ 9195957 (-) True G150833
CI01000028_08578132_08578857.mRNA mRNA downstream 113286 8578058 ~ 8580112 (-) True CI01000028_08578132_08578857
CI01000028_08574189_08576449.mRNA mRNA downstream 116949 8574045 ~ 8576449 (-) True CI01000028_08574189_08576449
CI01000028_08523322_08527676.mRNA mRNA downstream 165722 8523193 ~ 8527676 (-) True CI01000028_08523322_08527676
CI01000028_08253171_08253926.mRNA mRNA downstream 438937 8252965 ~ 8254461 (-) False CI01000028_08253171_08253926
CI01000028_08209464_08209781.mRNA mRNA downstream 483617 8207732 ~ 8209781 (-) False CI01000028_08209464_08209781
CI01000028_08696023_08698981.mRNA mRNA upstream 2074 8695817 ~ 8699183 (-) True CI01000028_08696023_08698981
CI01000028_08823968_08838447.mRNA mRNA upstream 129735 8823478 ~ 8839766 (-) True CI01000028_08823968_08838447
CI01000028_08879941_08885561.mRNA mRNA upstream 186098 8879841 ~ 8885703 (-) True CI01000028_08879941_08885561
CI01000028_09019298_09021471.mRNA mRNA upstream 323602 9017345 ~ 9023090 (-) True CI01000028_09019298_09021471
CI01000028_09035121_09057360.mRNA mRNA upstream 340836 9034579 ~ 9057965 (-) True CI01000028_09035121_09057360
TU170278 other downstream 669154 8011796 ~ 8024244 (-) False G149923
TU170277 other downstream 680691 7974568 ~ 8012707 (-) False G149923
TU169985 other downstream 1157655 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other downstream 1157655 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631
TU169776 other downstream 1460615 7229791 ~ 7232783 (-) True G149474
TU171580 other upstream 783102 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746

Expression Profile