RNA id: TU174823


Basic Information

Item Value
RNA id TU174823
length 455
RNA type TUCP
GC content 0.39
exon number 4
gene id CI01000029_03698769_03707177
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3698572 ~ 3707883 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGACGGTCCTATGATGTTTGTTGTACTGACATGCTTAAAGAATTGAAAAGTCCCTGCCTGTCAATGCCCCAACATGAAGGTTTACAAAACAGTTCTTTTACTAGGTTTATTCCTTTTAACAGGTTTCCTCAGGGGCCAGACCCAAAGCACAGATGTTCTGGAAGCGTATATTAAAACGGATGGGGCCTGGATAGTGAAATTGCCTAAAGTTCAATACAGTGTGAAAACAGTGGAAGAATGTGCCGTCAAGTGCAACAAAGAGACTTCCTTTACATGCAGGTCCTTTTTGTACATTGAAAAAGATCAGGATTGCGTAACATTACCTGCTAACTCAAAAACTGATCAGATACTGCGAAGAATGAGTGCTGCTCTCTATGAGAAAAAGGGTAAGATTTTATAGCCCCATCTATTTTATCACTTAACAGATTTTAAAGTTTAAAAGCAGATGATGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174931 lncRNA downstream 17753 3688227 ~ 3688470 (-) True G154047
TU174930 lncRNA downstream 18095 3687852 ~ 3688128 (-) True G154046
TU174924 lncRNA downstream 71680 3633985 ~ 3634543 (-) True G154040
TU174896 lncRNA downstream 131767 3574064 ~ 3574456 (-) True G154017
TU174830 lncRNA downstream 347868 3348381 ~ 3358355 (-) True G153952
TU174941 lncRNA upstream 28979 3736231 ~ 3740719 (-) True G154057
TU175024 lncRNA upstream 294924 4002176 ~ 4002475 (-) True G154137
TU175027 lncRNA upstream 349485 4056737 ~ 4057258 (-) True G154140
TU175031 lncRNA upstream 354930 4062182 ~ 4062422 (-) True G154144
TU175033 lncRNA upstream 357320 4064572 ~ 4064850 (-) True G154146
CI01000029_03625037_03636215.mRNA mRNA downstream 69190 3624704 ~ 3637033 (-) True CI01000029_03625037_03636215
CI01000029_03590053_03594170.mRNA mRNA downstream 111319 3589653 ~ 3594904 (-) True CI01000029_03590053_03594170
CI01000029_03534096_03563671.mRNA mRNA downstream 142552 3534052 ~ 3563671 (-) True CI01000029_03534096_03563671
CI01000029_03503783_03509429.mRNA mRNA downstream 196794 3503663 ~ 3509429 (-) True CI01000029_03503783_03509429
CI01000029_03397097_03444565.mRNA mRNA downstream 261658 3396139 ~ 3444565 (-) True CI01000029_03397097_03444565
CI01000029_03723621_03726874.mRNA mRNA upstream 15935 3723187 ~ 3727070 (-) True CI01000029_03723621_03726874
CI01000029_03746973_03752660.mRNA mRNA upstream 39684 3746936 ~ 3752660 (-) True CI01000029_03746973_03752660
CI01000029_03769171_03775841.mRNA mRNA upstream 61535 3768787 ~ 3775841 (-) True CI01000029_03769171_03775841
CI01000029_03799874_03822017.mRNA mRNA upstream 92603 3799855 ~ 3822181 (-) True CI01000029_03799874_03822017
CI01000029_03925339_03926640.mRNA mRNA upstream 217913 3925165 ~ 3926668 (-) True CI01000029_03925339_03926640
TU174756 other downstream 419669 3248777 ~ 3286554 (-) True G153891
TU173923 other downstream 1113421 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 2412100 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU175091 other upstream 753091 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 1278856 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 1278933 4986185 ~ 4987425 (-) True G154415
TU177741 other upstream 3463115 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 3659075 7366327 ~ 7369547 (-) False G156495

Expression Profile