RNA id: CI01000029_03708374_03721140.mRNA



Basic Information


Item Value
RNA id CI01000029_03708374_03721140.mRNA
length 2655
RNA type mRNA
GC content 0.45
exon number 13
gene id CI01000029_03708374_03721140
representative True

Chromosome Information


Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3708374 ~ 3721140 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTCTGCAGAAATACCCCAAAACCGAACTGTGGTAGAAACCAGTTTGAGTCAAAAGACAAACATCTTTCAATCTGTCAGCTCTGTTGTCCAGCATCATGAAGAAAACCAGTCGAGCTGCCAACTACCTCCAATGAGTGAATCTGACCCTAGTTTTCCATCTAAGTCGGTGAGTCAGGAGGCTTTTGAGGAACAGCGGGTATCTGAAATGGGCAGATCTGCCTGCCAACCTGCCCAACATATGTCTGAAAGATCCCCTCAAGAGAATCCAGGCCAAAATGAGCTTCTCCTTCAGCGTCAGGTGAAGCAGTTGCAGAGGGTTTTACAGGAACAGAACGCACTGCTCTCTCTTATCAGTCCAGGACTCATTTTATCTCCCACATTCTTAGCGCACTGGCAAGCCCAGACACCTCAAAGCTCTTCAGAAGCTGATCCCCTCAACCCTACTGAGAATTTAGATGCCTTCAAGGAAAGCTCAACCAAACCCTCATATTCTGGCCAGGCTGAGAATGAGTCAGAGGCTCTGGCAACTAATAACAGCAATGATGTTGCACCATCAGCAGAGCTCAGATGCTTGTTTCCTATTAAAGAAGAGTCTTCAGAAACTGCACAAGAAGACTGTCCTCTTAGCCCTTTCGGATTGAGGCAAGGTCTCCCACCAAACCCAGAGGAAAGGCCTATTCGACCAGGACTGAGAGAAGAGCAAAAAACATTTGAAGAGTTTGTTGAAGAACATCTCAAAACAGACCAGGCTGTTCTCCAATATGAGAATCAGGTTAGTACACAAATCATAGGAGCAGAGAAGAGGAATTTCCTTCGTAAAGGAGAAGGAACATCTAGAATTTCAAAGGGTAAGGACTGCTCACAAAATGTGAAGAGGAGATGCTCTATTAGTCCACAAACAATGAACATAAAGCCTAGTCAGAAGTCGGTACGACCCACTGAAGAGATGCCAAATAGGAGCAGTCCTGCTCTGAAGGGTGTAGGAAACCTCAGTGACCAAAGATCTGGCCTGGAAGACTCTCTAAAGAGGACCGCTGATCTACAAGAAGATAATTATTCATCAAACAGCAAAGGGAAAGTCAAAGCTTTGACTGCTAATATTGCTAACAATGCAGCCTCACTTAAAAGTAAGCACAGTGAAGGAGTCATGAGGAATTATGATAAAACCAATGGAAGTAAGCCAAGTGGATCTGCTCAGGCACAAAGTAGGAGCATTGGCTTTAAAAAAATTAATGACCACATTGTCAAAGTCAATGAGAAAAATTGTCTTACCAAACACTACCGTCAAAGTGGACGTACATCTAAAGAAGTCAATTTAACCGACGAGGTGATGGAGTCACTGGCTCTTAGTGAATCTAATGACAGCACTAGCAGTGAAGATGGACCCAACTCTCAGCCTCACAGTCCATTTCCTCATTATCTTTCAAGGCACACGGATCACAAAGATCAGAGTCTGGATCTGTCGGATGGCGACTACGCTAGTGATGCTCCGAGTGAGACTCGATTCAATGAAGAACATCGCACTTCAACTCCTATGTCTAGTTCTTCGAGCTTCAGCAGTGATTCTGAGCTCAAGAGCTTAGAGGAGTCTATGGCTAACCACTCCAAGAAAACAGAAGAAAGAAGGACCAACAGTGATTTTAGACCACCTTCTGCTCCTGAACCTCTCAGAACGACATTTCCAAAAGTCAAGGTTACTCCAGAAGACATCACACACGGCATGGAGCAAGAGAAACCACATACTTTAATCAGGTTTTGTAGAAAGATTATGACTTTTTCAAAAAATGTTGGTATTTTGAAGAAAAACTCTAGCCCTGAAACACAAGATCTGAGAGAGCAGATCTCATCTCTGAAGCAGCAGCTGATGGAGAGGGAGTCTCACTGGTCACAGGCCCACAGTCTCCTCCAGAGCCGTGTGGAAGCCCTTACCCGAGAGAACCAGGAGCTTCACAGCAGGCTCAATGTGAACAAGAAATCGCACCAGAGTGCTGGTTCCTTTGCTCCTCAGGCTGGATCATACAGCGCATTTGAGAAAAGCAGAGAGGAACCACAGAAGACCCCTCATGTTAGGAGCGCAACTCCAGCCTTTAACAAACCCACCATCCATAAGACACAACAGATCGATGTTAGTATGCTAACATTATTAATGTGCATTATCAAACAAGAACTGAATTCTGCACTTTACACTGACAGTCCACAGAACAATGGCATGATTACACAAGGTGGAAAGGGAAGTTTGTTTTATCATCATACTGACTGCAATGATGCACAAATGGCAACCCAGGCCAGAAAAGACAAAGTACAGGAGGAAACTCACTATCCAGATGGAAGGGTTGAACGTCTTTTTTTGAACGGATGTCGTGTGATCACATTTCGCAATGGAACGAAGAAAGAGATTGGTGTTGACAAGTCGATCACTGTTACCTTCTTCAACGGAGATGTTAAACGCACACTGGCTGATGGGACTGTGATATACTACTATTGTGATGCCCAAACAACACACTCAACCTATCCATCTGGTTTGGAGGTTATACAGTTTCCAAACAACCAAAGAGAAAAACACCATCCTGATGGCACAAGGGAAATATCCTTCCCGGATGGCACCGTCAAGATTCTCCACTCCGATGGTCGAGAGGAAAGTGTTTTTCCAGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU174342 lncRNA upstream 105540 3602590 ~ 3602834 (+) True G153513
TU174335 lncRNA upstream 114051 3588702 ~ 3594323 (+) True G153509
TU174331 lncRNA upstream 136304 3571841 ~ 3572070 (+) True G153505
TU174330 lncRNA upstream 136942 3571151 ~ 3571432 (+) True G153504
TU174254 lncRNA upstream 178795 3528946 ~ 3529579 (+) True G153445
TU174314 lncRNA downstream 29172 3750312 ~ 3984500 (+) True G153492
TU174373 lncRNA downstream 211965 3933105 ~ 3943762 (+) True G153541
TU174387 lncRNA downstream 271413 3992553 ~ 3994376 (+) True G153555
TU174393 lncRNA downstream 281184 4002324 ~ 4002561 (+) True G153561
TU174394 lncRNA downstream 281785 4002925 ~ 4003129 (+) True G153562
CI01000029_03689026_03697933.mRNA mRNA upstream 10300 3689026 ~ 3698074 (+) True CI01000029_03689026_03697933
CI01000029_03649051_03684709.mRNA mRNA upstream 23494 3649051 ~ 3684880 (+) True CI01000029_03649051_03684709
CI01000029_03640782_03646346.mRNA mRNA upstream 62010 3640782 ~ 3646364 (+) True CI01000029_03640782_03646346
CI01000029_03511828_03527110.mRNA mRNA upstream 179636 3511828 ~ 3528738 (+) False CI01000029_03511828_03527110
CI01000029_03499444_03499713.mRNA mRNA upstream 208188 3499193 ~ 3500186 (+) True CI01000029_03499444_03499713
CI01000029_03830894_03838298.mRNA mRNA downstream 108467 3829607 ~ 3838325 (+) True CI01000029_03830894_03838298
CI01000029_03855238_03922931.mRNA mRNA downstream 134098 3855238 ~ 3923120 (+) True CI01000029_03855238_03922931
CI01000029_03976118_03980629.mRNA mRNA downstream 254978 3976118 ~ 3980800 (+) True CI01000029_03976118_03980629
CI01000029_04007545_04011744.mRNA mRNA downstream 286405 4007545 ~ 4012008 (+) True CI01000029_04007545_04011744
CI01000029_04060211_04069639.mRNA mRNA downstream 337598 4058738 ~ 4070460 (+) True CI01000029_04060211_04069639
TU174291 other upstream 146370 3545125 ~ 3562004 (+) True G153475
TU173161 other upstream 945435 2761594 ~ 2762939 (+) True G152451
TU172657 other upstream 2180475 1526786 ~ 1527899 (+) True CI01000029_01526863_01527414
TU172072 other upstream 3336650 366580 ~ 371724 (+) False G151495
TU174646 other downstream 1012449 4733589 ~ 4740107 (+) True G153790
TU175511 other downstream 1549880 5271020 ~ 5271535 (+) True G154587
TU175455 other downstream 1736101 5457241 ~ 5457472 (+) True G154531
TU176089 other downstream 2561545 6282685 ~ 6288398 (+) True G155079
TU176095 other downstream 2710395 6431535 ~ 6490294 (+) False G155083

Expression Profile