RNA id: TU177932


Basic Information

Item Value
RNA id TU177932
length 2206
lncRNA type sense_over
GC content 0.41
exon number 3
gene id CI01000029_08041274_08048935
representative False

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8040747 ~ 8049427 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTGCAATTCAAGCTAATGCACTCACATTCACATAAAGTATCCTTGTTGACAAGTTTGGGTGAGTAAAGGCAAAACGCACAAGACATGCCCTTAGATGGCGATATAGCTTCTTTATAGCAGAAATAAACTGCTGCAGAAAAAGTTAGGTGCCATGCAAAATGTAATGTGTAATTGCATTAATCATCACAAATGTATCGGAGTAAAAAGTACATATACTTGTTCAAAAACGTACTCAAGTAGAGAGTAAAAGTTGCCAATATTTTTGATACTCAGTACATCTACAAAGTAGCCAAAAAGATACTTAAGTACAGTAACTAATTACATTTACTCAAATACTTTACACCTCTGCCTCTCAAGAACCTGATGACCAGGTCGTGCTTCCCCACAGGTTTAGTATCAATTAGATCATGGTGCACTGAAATGGCAGCCACTTAGACCTTCAGTGTGGAAGGAGACAGCCTTCATTCCAACCCTTCTTGAAGTAAGGTCGTCAGCGTATGCTCAGACAGCAAGAGCTTCCCCTCAAGTGTGCGCCATGCTCACATTGAACTAAAGGCAGTGATTGTGGCAGCCAGGTGATCGAAGCAGCACAAGATCGACACACACAGCACGCACCCCGCGTCTATACTCTCCCGTCTTATATCCAACCCAAAGCGTCATGAATGAACAGGCCGCAGGTGTACAGGGGTGGAGCTCACCCTCAGGAAAACTTGCGCATTGTTTTTCAGCAGGAAGGGTTCTTCAAGCGTCTTGGAGACACGGCCACAGTTCTTCTGGATTTAGTTTGTCTCAGTTTCATCTGTTTTTTCATGTAATCACAGACGGATTCGATGATGGTGAGATCAGATCTCCGCCTGTTGTCAGATTCCTTGTGCATTTCTAGACCCCATATTTTCTGTGCCACTTAACCTCGGGACGTCCCTTACCTTTCACCCTGTGGTCGTCACCTCAGTGTGTCTTTACATGGGCTCAGCAAAGAATCAACTTTCTGCATGTACTTTGACCCAACCTGCTATTTGTAGTGCTTCAGAAATAGTCACCTACACATACTCGAAAGTCAGAGAGCGAGAGGGAGCACAGCACAGAAACAGGCGTCTAAAAATGCCAAACAATATAACATGGTTTCAAAACAGACTCATCAGGCAAATATGCCTTCAGTTTCCCTTAGGATTCTTTGAGATTCCGGCGGTGAAACTCTGGGCCCTCAGACGTTTGTCCCTCCTCCCTAAAGACTTAGGGGTAGGGAACCAGTCATTGGAAACCAGGATCAAACATTCTCAGGTCCAGACGAATCATTGTGTCAAATGATTCATTTAAATGTTAGTACATATTAGTTAAAGACACTTAATATAAAGTGGGAATGGTTATTTTTTATAGTAAAACTTTCTTTTCTGCAAATAAATAATACAGAAAACTGCAAATTTTGTTTGCAAATGTCTGAAATAATGTTTAAAAAGTGCTTTATGATTAAAAGATTAGATTTTGTATTGACAAAAATCTGTCTCTTTAGAGAAACTGTCAAGCACTTGGTGCGAATCTCGCATCTGTGCATAATAAAGTGGAAAATGATTTCCTGCTGAGTCTGTTGCCTTCTTCTTCCAAACAATCTTGGGGTGGTGGTCATGATGGTGAAAAAGAAGGACAGTGGTTGTGGAGTGATGGAACTGCGTATGACTATACCAACTGGTGCCCTGGAGAACCTAACAATCACCGTCGTGTCGAGAACTGTTTGGAGATCAACTGGTTCTCTAAAAGTTGCTGGAACGATGTGGCATGTACAGTCTCAAAGAGCTATGTTTGTTCTATGGGCCTGTGAGATCATATGTAGTCATCCCGCTCCACAGTTACTTTGATTGAACTATTTACTTTTTCTGATCTTATCTTTACACAAATGTTATTCTGAAATCAAATTTCTTCTCAACTTTAATCTCTTCTCTGAAATACTCCTCAAGTTAATAAAAGCATTGATAAAGCAAACCATGTGCATTGTGGACAGTCAAATTAATGTACATAAAAATGTAAGTATATTGTGTAGCAAGGTTTGAGGATATGGTTATCATCAGGGGAGGAGTTTAAGCAAGCTGCACACATGACTGAATGGATTGAAGCACCTGCCTTTTGTTTCAGGCAAGTTTTATCATCCTAATTTACTCCTAATTTGTCAAGTCCTGTCTTGAGAGCTTGTACAAAATTTGCGTTTAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177964 lncRNA downstream 110404 7929759 ~ 7930343 (-) True G156736
TU177875 lncRNA downstream 311542 7728966 ~ 7729205 (-) True G156661
TU177873 lncRNA downstream 321710 7718713 ~ 7719037 (-) True G156659
TU177839 lncRNA downstream 341871 7641036 ~ 7698876 (-) True G156628
TU177844 lncRNA downstream 387006 7643283 ~ 7653741 (-) True G156633
TU177944 lncRNA upstream 56 8043304 ~ 8047097 (-) True G156716
TU177946 lncRNA upstream 177142 8220390 ~ 8226568 (-) True G156718
TU177933 lncRNA upstream 192947 8236195 ~ 8237292 (-) True CI01000029_08237701_08245368
TU178094 lncRNA upstream 224152 8267400 ~ 8267662 (-) True G156850
TU178095 lncRNA upstream 227504 8270752 ~ 8271021 (-) True G156851
CI01000029_07946659_07953611.mRNA mRNA downstream 87136 7946402 ~ 7953611 (-) True CI01000029_07946659_07953611
CI01000029_07850412_07853905.mRNA mRNA downstream 186730 7850180 ~ 7854017 (-) True CI01000029_07850412_07853905
CI01000029_07836385_07847829.mRNA mRNA downstream 192918 7836247 ~ 7847829 (-) True CI01000029_07836385_07847829
CI01000029_07820703_07833528.mRNA mRNA downstream 206662 7820675 ~ 7834085 (-) True CI01000029_07820703_07833528
CI01000029_07810274_07813211.mRNA mRNA downstream 227536 7809978 ~ 7813211 (-) True CI01000029_07810274_07813211
CI01000029_08083189_08089291.mRNA mRNA upstream 39509 8082757 ~ 8089291 (-) True CI01000029_08083189_08089291
CI01000029_08092122_08094899.mRNA mRNA upstream 48419 8091667 ~ 8094899 (-) True CI01000029_08092122_08094899
CI01000029_08100383_08125091.mRNA mRNA upstream 56640 8099888 ~ 8125091 (-) True CI01000029_08100383_08125091
CI01000029_08178470_08183999.mRNA mRNA upstream 135172 8178420 ~ 8183999 (-) True CI01000029_08178470_08183999
CI01000029_08185095_08190376.mRNA mRNA upstream 141781 8185029 ~ 8190376 (-) True CI01000029_08185095_08190376
TU177684 other downstream 671200 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 671200 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 869796 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3053322 4986108 ~ 4987425 (-) False G154415

Expression Profile