RNA id: TU177944


Basic Information

Item Value
RNA id TU177944
length 482
lncRNA type sense_over
GC content 0.34
exon number 2
gene id G156716
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8043304 ~ 8047097 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACATCCTGGATGTTATTGCCTGATCTTGTGTGTATAAATATGATCTTCAAGAATGTTATGGTATTACACAGGCTCTGTGTCAGCTTGAACATTCTTGATTCTGAAGGCAAGAGTTTGAAAACCAAGATTCATCATGGCAATGCTGAGAAGTGTTCTGCTTTTTTTCATGATCTTCTCCATGGGGAATGCACAAGTTGATTTATTCCGAAAATGTCCAATACAACTTGAGTAAAAGTCTTAGAGTATATGATTTTAACAGTACTTAAGTATTTTACTCGTGCTGAATGTCGGCTAAAAGATGCAGTAGTCCTCGACACTTGAGAAACAAGCCAATGAAAATAAGAAACCGTTGATTTGTAAGATGAGAAATCAAGCTTATTTTCTAAAATCAAAATAAAACTGAACACCTCAATATTGCAATAAATCAAGGTCGACAGTCTCAGTTAAGCTCAAGTGCTCAAAGAGGCCATAAATAACCCAATATCCATCAAAAAGATCTTGTCAATATAGTGGATAAATAAAATAATGTTAAGTAAAATTAAAAAGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177932 lncRNA downstream 56 8040747 ~ 8043248 (-) False CI01000029_08041274_08048935
TU177964 lncRNA downstream 112961 7929759 ~ 7930343 (-) True G156736
TU177875 lncRNA downstream 314099 7728966 ~ 7729205 (-) True G156661
TU177873 lncRNA downstream 324267 7718713 ~ 7719037 (-) True G156659
TU177839 lncRNA downstream 344428 7641036 ~ 7698876 (-) True G156628
TU177946 lncRNA upstream 173293 8220390 ~ 8226568 (-) True G156718
TU177933 lncRNA upstream 189098 8236195 ~ 8237292 (-) True CI01000029_08237701_08245368
TU178094 lncRNA upstream 220303 8267400 ~ 8267662 (-) True G156850
TU178095 lncRNA upstream 223655 8270752 ~ 8271021 (-) True G156851
TU178096 lncRNA upstream 224352 8271449 ~ 8271686 (-) True G156852
CI01000029_07946659_07953611.mRNA mRNA downstream 89693 7946402 ~ 7953611 (-) True CI01000029_07946659_07953611
CI01000029_07850412_07853905.mRNA mRNA downstream 189287 7850180 ~ 7854017 (-) True CI01000029_07850412_07853905
CI01000029_07836385_07847829.mRNA mRNA downstream 195475 7836247 ~ 7847829 (-) True CI01000029_07836385_07847829
CI01000029_07820703_07833528.mRNA mRNA downstream 209219 7820675 ~ 7834085 (-) True CI01000029_07820703_07833528
CI01000029_07810274_07813211.mRNA mRNA downstream 230093 7809978 ~ 7813211 (-) True CI01000029_07810274_07813211
CI01000029_08083189_08089291.mRNA mRNA upstream 35660 8082757 ~ 8089291 (-) True CI01000029_08083189_08089291
CI01000029_08092122_08094899.mRNA mRNA upstream 44570 8091667 ~ 8094899 (-) True CI01000029_08092122_08094899
CI01000029_08100383_08125091.mRNA mRNA upstream 52791 8099888 ~ 8125091 (-) True CI01000029_08100383_08125091
CI01000029_08178470_08183999.mRNA mRNA upstream 131323 8178420 ~ 8183999 (-) True CI01000029_08178470_08183999
CI01000029_08185095_08190376.mRNA mRNA upstream 137932 8185029 ~ 8190376 (-) True CI01000029_08185095_08190376
TU177684 other downstream 673757 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 673757 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 872353 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3055879 4986108 ~ 4987425 (-) False G154415

Expression Profile