RNA id: CI01000029_08506379_08516187.mRNA



Basic Information


Item Value
RNA id CI01000029_08506379_08516187.mRNA
length 1880
RNA type mRNA
GC content 0.50
exon number 13
gene id CI01000029_08506379_08516187
representative True

Chromosome Information


Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8506379 ~ 8516305 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CGCTCCAAGCGTCCCAGCGGAGACCGCGGTCCCGTCCCAGAGGAGCCAGACTCCAGAGGAACACGTTTCCCAGCAGGAGGGTCAAATGCAGATCATGTACTGCAAAGATCAGGTGTACCAGGGAGACAAGGAGTTCAGCCTTGAAGAGCTCCGTGCGCAGCGCTACTACAGAGCCCTGAGCGAAAAGTCCTCACACCTCAGAAAAGTAAAGCAGGACCTGCAGCTTCAGATCGAGCAGAGACTCATTCGGCAGAGAATCAGCAGCACCGCAGCGCAGCAGCAGATCGTTCTCGAGGAGGCCAGTTCTTCCTCCCAGATGTCTACAAGTTCATGTGAATCTGCCGCCACTGCGGTGAAATCAGCTCCATTCATGATATACAGCGAGCAGGAAGAAGGTCGTGTGGTTCAGAGATCATTTTCGGCGAACCGTGTATCTCTGAAGCTGCCCACCTTGAGTCTGAAAGCGCCGAAGTCAAGAGCCGAGCTCTCCGCTGACAAAGACGCGTCCATCTCTCGCTCTGAGGAGGCCATCATCAACGGCCACTGGAATAAGACTCTGTGCCGGAGTCCAAATGACACGTGTGAATTCGCTCGTGCGGCTCAGCTCGCTTCAACTCCGTTCGGAGGAGTCGAGAGGCCAAAAGTGTCCGAAGCAGGACTGACGGAGAATCTGAGCAGAAATGCTCCAGAAGCCACTAAAGCGCCGAGCTCTGATACGAGTCCTGAGGAGAAAAAGCTCAGTCCTATCCTAGAGATCAGTCAGGAGTGTGGCAGCACTTCCTTCGCTACCTTTTCCCAGGATCCCATGAAATGCTTTAATGACACTGAGATCAGCCGATCTGTGGAGAGAGCAGAGACTGTGCTGGAGAATGTCACTGAATCCGAGGACGTCTGCAGTCCGGGCGTAAGATCCAGGCTGTTCCAGCAAGCAGACGTGACGTCGTTTCCAAACTTTCACCGTAAAACTGGACTTCTGCCTGACACCAGCAGCAACTTAAATCTCGGTACATATGGAGAGACGTTGTTTTACTGCGGTAAGTTGGGGACGCTGAAGGACTTCACCTTGTACTCGTCCAGCACCGCTGCTGTCCTTCTGAAGCTGGACTCTTCCTCAGTGCCGTGGGATTTCTTCATCAGCTCGCAGCTCAGAGCTCGACTGTCACATGATCAACAGGATCATCTCGCCCAGATCTCCTGCTATGTGTATGAGAACGGCTGCATGACTCTCTGGAGGATTCCTCGTGGAGACACCATTGAGGATCTTCTCTCTGAACCCATTGCTAGACAGGATGTTTCACTTATAGTCCTTCAGTTACTAGAGTTGGTGAAGCGGTTTCATTCCTGTCAGGTGGTTCATGGAGGCCTGAAGCCAGAATCACTGTACTTTTACCTCAGTGGCATTACAGCACTAGATTTCTCAAACGCAGTGGATCTACAGCTCCAGAGTGACGTGAAAACGGCACAAGATCTTCCGTCTGCACAGGACTACATACAACGGGGTCTTCTGTCACCTTCTGCCTCACCTTATCAGGTTGATCTGATTGGCCTTGCAGAAATCGTGCACATGCTGCTGTTTAATCGACCAATGAAAGTGACGCTGGAGAATTCGGCCTGGAGTTTGGATGAATGTTCTGGATCTCACCACAGCGCTCCTGTAAATTCCTTATGGAAGGACTTTTTCCACATGATTTTGAATCCAGAGCAAACGTCTTCAAAGCTGGTTTTGTCCGATCTCATCAGTAATGTGAGCAACAGCTTATGAATGCCTGATTTTAAGTCAGGTTACACTATTTTGTTATAAAATAATGTTATGTTCTTTTCACTCCATGTAAAACAGTGATAATGGAATTAATGTTATATATTGTTGTTTATACACGTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU176904 lncRNA upstream 64028 8442140 ~ 8442351 (+) True G155809
TU176859 lncRNA upstream 122038 8382868 ~ 8384341 (+) True G155769
TU176848 lncRNA upstream 124595 8381585 ~ 8381784 (+) True G155758
TU176847 lncRNA upstream 128089 8378071 ~ 8378290 (+) True G155757
TU176843 lncRNA upstream 132050 8374034 ~ 8374329 (+) True G155753
TU176952 lncRNA downstream 50002 8566307 ~ 8567447 (+) False G155845
TU176953 lncRNA downstream 50057 8566362 ~ 8567447 (+) True G155845
TU176956 lncRNA downstream 51310 8567615 ~ 8567913 (+) True G155848
TU176960 lncRNA downstream 73081 8589386 ~ 8593261 (+) True G155851
TU176964 lncRNA downstream 77242 8593547 ~ 8593956 (+) True G155855
CI01000029_08484998_08502958.mRNA mRNA upstream 3210 8484952 ~ 8503169 (+) True CI01000029_08484998_08502958
CI01000029_08443106_08447917.mRNA mRNA upstream 58462 8442958 ~ 8447917 (+) True CI01000029_08443106_08447917
CI01000029_08425310_08441838.mRNA mRNA upstream 64532 8423797 ~ 8441847 (+) True CI01000029_08425310_08441838
CI01000029_08367350_08368348.mRNA mRNA upstream 137865 8366344 ~ 8368514 (+) True CI01000029_08367350_08368348
CI01000029_08346604_08357224.mRNA mRNA upstream 148746 8346401 ~ 8357633 (+) True CI01000029_08346604_08357224
CI01000029_08533907_08555317.mRNA mRNA downstream 17602 8533907 ~ 8555969 (+) True CI01000029_08533907_08555317
CI01000029_08558693_08564749.mRNA mRNA downstream 41958 8558263 ~ 8564996 (+) True CI01000029_08558693_08564749
CI01000029_08578097_08583564.mRNA mRNA downstream 61510 8577815 ~ 8583973 (+) True CI01000029_08578097_08583564
CI01000029_08654610_08655443.mRNA mRNA downstream 136277 8652582 ~ 8656550 (+) True CI01000029_08654610_08655443
CI01000029_08743604_08749941.mRNA mRNA downstream 224429 8740734 ~ 8750337 (+) True CI01000029_08743604_08749941
TU176707 other upstream 574202 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 868545 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 1598947 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 2016085 6431535 ~ 6490294 (+) False G155083
TU177125 other downstream 448513 8964818 ~ 9064541 (+) False G156007

Expression Profile