RNA id: CI01000029_09183609_09186199.mRNA



Basic Information


Item Value
RNA id CI01000029_09183609_09186199.mRNA
length 1195
RNA type mRNA
GC content 0.41
exon number 3
gene id CI01000029_09183609_09186199
representative True

Chromosome Information


Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9183033 ~ 9186473 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCATAAAAGCCTCGTCTTTTCAAAGACTTCATGAGATAAACAGCCAGAGGTCAAAGGTCAAATGTCTCAGAAAGAAGTAAGATTGTAATTCATGGATTTCTTTTCAGAATGTCAGTGAAACATGTTTTTATTTGTACAACATTTCTATTCAACCTCCAACAGAATATGAATAATCCTGAAACATTTCACTGTCATGATCGGACATGAGAAGACAAAACTAACGAACATCTGCAATTTTATTCTCTTTCATGTCAGAGAAATCAGTGTCAGTCTGTGCAACATTAAAGCATGTCAGTAAAGTCACAGAATTGTGTTGTTTCCAGATGAAAAGGAACGTCTGCACTTTATGTGGTTGTTCTATAAGCGTTGCACGGTTGGCATAGCAACAGCAGTTAATGTTAGTTAATGTGTTTAACGACAGTGTGTGTCATATTAGTGTTGAGAGGAGAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTATCTATCTATCTATCTATCATCTATCATCTATCTGCTCAGTGAAGAGTTCTGTTGGGTTGGTTGACTGGTTTCCATAGCAACACAACACAACATGGAGTTCCTGCACTGGAGTTGTCAGGACGTGGCGCACTGGATCGAGTCTATCGGATTCCCCCAGTATAAGGCGTGTTTCACTGAGAACTTCATCACAGGCAGAAAACTGATCCATGTCAGCTGCATCACCCTGCCACGGCTGGGAATCACCGACTTCCAGCATATGAAGACTATCTCAGCTCGGGTCGGAGAACTGCTCGGGGTCTCGGAGCCGCGCTGGTGTCGGAGCGTTGCGGATCCCCCTCATGATGACCTGACAGGTTTCCTGAAGATGAAGAGCAGGACCGGCCAGCACACAGATTCCCTCACATATGAGCAGTTCCTCATTAACAAGAGCAAATAAACCCGCTTCAATCAATCAATCAATCAATCAAAGAGCAGCTCTTGAACATTCAGTGTGTTTTCTACAATATGATTTTGAAGAATCACAACTGGAGTCCGTAAACACAACGAGTCCTGCATTAAACAGATGTTCACATGCTGAAAATAATGCATTATTGTGCATTATTACTAGCGGCATCTGCTATTAAACTGATTATTATAAGCGTTCAAAACATAAAACAACTCATGAAACAGAAAAGAATGTAAATGATGTACAGAATTAGAAATTGCAATCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU177231 lncRNA upstream 377 9182439 ~ 9182656 (+) True G156099
TU177151 lncRNA upstream 25588 9155752 ~ 9157445 (+) True G156028
TU177217 lncRNA upstream 57947 9124475 ~ 9125086 (+) True G156091
TU177166 lncRNA upstream 64400 9117716 ~ 9118633 (+) True G156043
TU177211 lncRNA upstream 66110 9116632 ~ 9116923 (+) True G156087
TU177239 lncRNA downstream 21900 9208373 ~ 9208598 (+) True G156107
TU177241 lncRNA downstream 40778 9227251 ~ 9227785 (+) True G156109
TU177244 lncRNA downstream 52782 9239255 ~ 9239481 (+) True G156112
TU177245 lncRNA downstream 53609 9240082 ~ 9240339 (+) True G156113
TU177247 lncRNA downstream 63591 9250064 ~ 9250270 (+) True G156115
CI01000029_09166838_09170965.mRNA mRNA upstream 12053 9166838 ~ 9170980 (+) True CI01000029_09166838_09170965
CI01000029_09159075_09162036.mRNA mRNA upstream 20569 9159075 ~ 9162464 (+) True CI01000029_09159075_09162036
CI01000029_09146276_09147817.mRNA mRNA upstream 35202 9146224 ~ 9147831 (+) True CI01000029_09146276_09147817
CI01000029_09142383_09143514.mRNA mRNA upstream 39505 9142331 ~ 9143528 (+) True CI01000029_09142383_09143514
CI01000029_09132920_09139682.mRNA mRNA upstream 42714 9132570 ~ 9140319 (+) True CI01000029_09132920_09139682
CI01000029_09196479_09205243.mRNA mRNA downstream 8591 9195064 ~ 9205417 (+) True CI01000029_09196479_09205243
CI01000029_09272016_09280223.mRNA mRNA downstream 85508 9271981 ~ 9280885 (+) True CI01000029_09272016_09280223
CI01000029_09284343_09295992.mRNA mRNA downstream 97870 9284343 ~ 9295992 (+) True CI01000029_09284343_09295992
CI01000029_09297723_09298362.mRNA mRNA downstream 111250 9297723 ~ 9298604 (+) True CI01000029_09297723_09298362
CI01000029_09322744_09351108.mRNA mRNA downstream 136271 9322744 ~ 9351748 (+) True CI01000029_09322744_09351108
TU177125 other upstream 118492 8964818 ~ 9064541 (+) False G156007
TU176707 other upstream 1250856 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 1545199 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 2275601 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176099 other upstream 2692739 6431535 ~ 6490294 (+) True G155083

Expression Profile