RNA id: TU174924


Basic Information

Item Value
RNA id TU174924
length 559
lncRNA type intronic
GC content 0.32
exon number 1
gene id G154040
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3633985 ~ 3634543 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATACCCTCATGTCACGATTCGATACATATCACGATACTGAACTCACGATACGATATTATTGCGATACTCCAAGACATGGTAAAAGGATAACAAAAAATGTACTGTTGATTAAAATGCTAAATTTGGTATTACATTGGGAGTGGAAATGAATAGGCTTGGACTTGGTGCTGGTAACCCAATGCACAGGACAATGGTGACACCAGAATAAAAATATTCATGATTCTAAAACAGATTTATTTTAGATGAATATGTTTGCACTCTGTTACTGACTAGATATATTTAAAATAATGTAGGCTAATTTTTACTGGAAACATAAGACATTTGGCATTATCAGGACCCACAAATATTCCCCCATTGCATTATTATACATTATATTCAACATTATATATAGTAGTTTAATGTAGTACTGACACTAAAACTCTGTAAACTTGGATTTTTTTCTCACACAGTAATTTTCACTTTGAATGAACTAAGCACAACACATATTGTCACTATCCACGATACGATATTGTTGCATTTTTGTATTGCGATATATTGTGACACGATATATTGTTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174896 lncRNA downstream 59529 3574064 ~ 3574456 (-) True G154017
TU174830 lncRNA downstream 275630 3348381 ~ 3358355 (-) True G153952
TU174864 lncRNA downstream 323004 3310710 ~ 3310981 (-) True G153985
TU174171 lncRNA downstream 584656 3049059 ~ 3049329 (-) True G153373
TU174126 lncRNA downstream 719754 2912932 ~ 2914231 (-) True G153333
TU174930 lncRNA upstream 53309 3687852 ~ 3688128 (-) True G154046
TU174931 lncRNA upstream 53684 3688227 ~ 3688470 (-) True G154047
TU174941 lncRNA upstream 101688 3736231 ~ 3740719 (-) True G154057
TU175024 lncRNA upstream 367633 4002176 ~ 4002475 (-) True G154137
TU175027 lncRNA upstream 422194 4056737 ~ 4057258 (-) True G154140
CI01000029_03590053_03594170.mRNA mRNA downstream 39081 3589653 ~ 3594904 (-) True CI01000029_03590053_03594170
CI01000029_03534096_03563671.mRNA mRNA downstream 70314 3534052 ~ 3563671 (-) True CI01000029_03534096_03563671
CI01000029_03503783_03509429.mRNA mRNA downstream 124556 3503663 ~ 3509429 (-) True CI01000029_03503783_03509429
CI01000029_03397097_03444565.mRNA mRNA downstream 189420 3396139 ~ 3444565 (-) True CI01000029_03397097_03444565
CI01000029_03382508_03395312.mRNA mRNA downstream 238673 3382350 ~ 3395312 (-) True CI01000029_03382508_03395312
CI01000029_03698769_03707177.mRNA mRNA upstream 64029 3698572 ~ 3707883 (-) False CI01000029_03698769_03707177
CI01000029_03723621_03726874.mRNA mRNA upstream 88644 3723187 ~ 3727070 (-) True CI01000029_03723621_03726874
CI01000029_03746973_03752660.mRNA mRNA upstream 112393 3746936 ~ 3752660 (-) True CI01000029_03746973_03752660
CI01000029_03769171_03775841.mRNA mRNA upstream 134244 3768787 ~ 3775841 (-) True CI01000029_03769171_03775841
CI01000029_03799874_03822017.mRNA mRNA upstream 165312 3799855 ~ 3822181 (-) True CI01000029_03799874_03822017
TU174756 other downstream 347431 3248777 ~ 3286554 (-) True G153891
TU173923 other downstream 1041183 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 2339862 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU174823 other upstream 71680 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 825800 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 1351565 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 1351642 4986185 ~ 4987425 (-) True G154415
TU177741 other upstream 3535824 7170367 ~ 7170951 (-) False G156542

Expression Profile