RNA id: TU174311


Basic Information

Item Value
RNA id TU174311
length 503
lncRNA type read_through
GC content 0.40
exon number 2
gene id G153491
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3698482 ~ 3731627 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGCCATCGCTTTAATGTAGGAAAACATATATTTTTAAATCAGATCTGATTACATTTTTAGTGCTTTGAAGAGTTCTATAATAAAACATGTTTAATGGGGACTGCCTCAAACTGGAACACATCCGGCGTGTGCATATAACCGTACAGACTGACAGTGGGCTTGACCGTTTGTAAAACTGAACTTCTGAACAGGGTCTTTAAAACAGCTTATGCATCAATAAAATTTCATTACTTTGAGTTGTTCACTTAAATTCCATTGCACATCATTGGACTTATCTGACTAATTCTCAGATTGGTTTAATATGGCTTTCTATCCAGTCGACAAACTTGGAGACGCGGGTATACACTCCAGGTTTCATGGCATTAGCACAGCCGAGACCCCATGATGTCACTCCCTGAAGGACGAAGGTGTTCTGTGCGTAGCAGACAAGAGGCCCACCACTGTCACCCTGAATGAGTGTGAGGAACACATCACAATTTAAGTTGTTATTCATTTAAAATCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174342 lncRNA upstream 95648 3602590 ~ 3602834 (+) True G153513
TU174335 lncRNA upstream 104159 3588702 ~ 3594323 (+) True G153509
TU174331 lncRNA upstream 126412 3571841 ~ 3572070 (+) True G153505
TU174330 lncRNA upstream 127050 3571151 ~ 3571432 (+) True G153504
TU174254 lncRNA upstream 168903 3528946 ~ 3529579 (+) True G153445
TU174314 lncRNA downstream 18685 3750312 ~ 3984500 (+) True G153492
TU174373 lncRNA downstream 201478 3933105 ~ 3943762 (+) True G153541
TU174387 lncRNA downstream 260926 3992553 ~ 3994376 (+) True G153555
TU174393 lncRNA downstream 270697 4002324 ~ 4002561 (+) True G153561
TU174394 lncRNA downstream 271298 4002925 ~ 4003129 (+) True G153562
CI01000029_03689026_03697933.mRNA mRNA upstream 408 3689026 ~ 3698074 (+) True CI01000029_03689026_03697933
CI01000029_03649051_03684709.mRNA mRNA upstream 13602 3649051 ~ 3684880 (+) True CI01000029_03649051_03684709
CI01000029_03640782_03646346.mRNA mRNA upstream 52118 3640782 ~ 3646364 (+) True CI01000029_03640782_03646346
CI01000029_03511828_03527110.mRNA mRNA upstream 169744 3511828 ~ 3528738 (+) False CI01000029_03511828_03527110
CI01000029_03499444_03499713.mRNA mRNA upstream 198296 3499193 ~ 3500186 (+) True CI01000029_03499444_03499713
CI01000029_03830894_03838298.mRNA mRNA downstream 97980 3829607 ~ 3838325 (+) True CI01000029_03830894_03838298
CI01000029_03855238_03922931.mRNA mRNA downstream 123611 3855238 ~ 3923120 (+) True CI01000029_03855238_03922931
CI01000029_03976118_03980629.mRNA mRNA downstream 244491 3976118 ~ 3980800 (+) True CI01000029_03976118_03980629
CI01000029_04007545_04011744.mRNA mRNA downstream 275918 4007545 ~ 4012008 (+) True CI01000029_04007545_04011744
CI01000029_04060211_04069639.mRNA mRNA downstream 327111 4058738 ~ 4070460 (+) True CI01000029_04060211_04069639
TU174291 other upstream 136478 3545125 ~ 3562004 (+) True G153475
TU173161 other upstream 935543 2761594 ~ 2762939 (+) True G152451
TU172657 other upstream 2170583 1526786 ~ 1527899 (+) True CI01000029_01526863_01527414
TU172072 other upstream 3326758 366580 ~ 371724 (+) False G151495
TU174646 other downstream 1001962 4733589 ~ 4740107 (+) True G153790
TU175511 other downstream 1539393 5271020 ~ 5271535 (+) True G154587
TU175455 other downstream 1725614 5457241 ~ 5457472 (+) True G154531
TU176089 other downstream 2551058 6282685 ~ 6288398 (+) True G155079
TU176095 other downstream 2699908 6431535 ~ 6490294 (+) False G155083

Expression Profile