RNA id: TU174394


Basic Information

Item Value
RNA id TU174394
length 205
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G153562
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4002925 ~ 4003129 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAAAACTCAATGGACTCAGGGGAGGCGCAGACTCTCGTATGAGACACCCACACCTGTGGTTGTCGCTGTTGGACAGTGTTACTTTAGAAAAACAAGTGATTTATACACTTCACATACACTTCAAATGCATTATGGGATACTGTATATGCTAAATGTATACATTGTAGAAAACAACCTTTTGTTGTACTAAGGAACTTGTTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174393 lncRNA upstream 364 4002324 ~ 4002561 (+) True G153561
TU174387 lncRNA upstream 8549 3992553 ~ 3994376 (+) True G153555
TU174314 lncRNA upstream 18425 3750312 ~ 3984500 (+) True G153492
TU174373 lncRNA upstream 59163 3933105 ~ 3943762 (+) True G153541
TU174311 lncRNA upstream 271298 3698482 ~ 3731627 (+) True G153491
TU174400 lncRNA downstream 9558 4012687 ~ 4012998 (+) True G153568
TU174421 lncRNA downstream 70064 4073193 ~ 4073634 (+) True G153589
TU174430 lncRNA downstream 115402 4118531 ~ 4118925 (+) True G153598
TU174432 lncRNA downstream 116756 4119885 ~ 4120221 (+) True G153600
TU174437 lncRNA downstream 121630 4124759 ~ 4135507 (+) True G153602
CI01000029_03976118_03980629.mRNA mRNA upstream 22125 3976118 ~ 3980800 (+) True CI01000029_03976118_03980629
CI01000029_03855238_03922931.mRNA mRNA upstream 79805 3855238 ~ 3923120 (+) True CI01000029_03855238_03922931
CI01000029_03830894_03838298.mRNA mRNA upstream 164600 3829607 ~ 3838325 (+) True CI01000029_03830894_03838298
CI01000029_03708374_03721140.mRNA mRNA upstream 281785 3708374 ~ 3721140 (+) True CI01000029_03708374_03721140
CI01000029_03689026_03697933.mRNA mRNA upstream 304851 3689026 ~ 3698074 (+) True CI01000029_03689026_03697933
CI01000029_04007545_04011744.mRNA mRNA downstream 4416 4007545 ~ 4012008 (+) True CI01000029_04007545_04011744
CI01000029_04060211_04069639.mRNA mRNA downstream 55609 4058738 ~ 4070460 (+) True CI01000029_04060211_04069639
CI01000029_04076167_04079831.mRNA mRNA downstream 72667 4075796 ~ 4079964 (+) True CI01000029_04076167_04079831
CI01000029_04099307_04107542.mRNA mRNA downstream 96178 4099307 ~ 4107547 (+) True CI01000029_04099307_04107542
CI01000029_04143243_04143794.mRNA mRNA downstream 140114 4143243 ~ 4144051 (+) True CI01000029_04143243_04143794
TU174291 other upstream 440921 3545125 ~ 3562004 (+) True G153475
TU173161 other upstream 1239986 2761594 ~ 2762939 (+) True G152451
TU172657 other upstream 2475026 1526786 ~ 1527899 (+) True CI01000029_01526863_01527414
TU172072 other upstream 3631201 366580 ~ 371724 (+) False G151495
TU174646 other downstream 730460 4733589 ~ 4740107 (+) True G153790
TU175511 other downstream 1267891 5271020 ~ 5271535 (+) True G154587
TU175455 other downstream 1454112 5457241 ~ 5457472 (+) True G154531
TU176089 other downstream 2279556 6282685 ~ 6288398 (+) True G155079
TU176095 other downstream 2428406 6431535 ~ 6490294 (+) False G155083

Expression Profile