RNA id: TU175027


Basic Information

Item Value
RNA id TU175027
length 522
lncRNA type intronic
GC content 0.36
exon number 1
gene id G154140
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4056737 ~ 4057258 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCACCTTGCTGATGATGATGGATTCTTAATCACTTGAAAACTGCTCCATTTATCAAAGTGGGATCCATTTATGACTTTTTAAAATAATATGTGACGAGTTGTCAAACAGCAGTGGATCCATTTTTGCCTGCTATGAAGTGTACTTAGTTCAATTAGGATATTTAAATATCTTTTATAAACGTTCACTAGAGAAAAAAAAAAACATTACTGGTGTGCATCTTGATACAAAACAATGGCACTGACATATTTTAAGATATGTCAGTACAGGTTGCTTTCAGTTAAAACAGCTCAATCACGCATTTTAGTCTAGGACTAGCTTAAGCCTTATCTGTGAAACCAGGGGAATGTATATTAACTGAGTGCATGATTTGTGGACACAGTTGACTGGCATGCTACAGACAGAAATATACAGTAAGAAAGAAGATAACATACTAAAGTAGCAGAGAGGTTAAACTGGGTGAGGGTGATTTAAGGTGAAGGAGAGTATTAGCTCTTCTAAAAACACTCCTAAAGAAAGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175024 lncRNA downstream 54262 4002176 ~ 4002475 (-) True G154137
TU174941 lncRNA downstream 316018 3736231 ~ 3740719 (-) True G154057
TU174931 lncRNA downstream 368267 3688227 ~ 3688470 (-) True G154047
TU174930 lncRNA downstream 368609 3687852 ~ 3688128 (-) True G154046
TU174924 lncRNA downstream 422194 3633985 ~ 3634543 (-) True G154040
TU175031 lncRNA upstream 4924 4062182 ~ 4062422 (-) True G154144
TU175033 lncRNA upstream 7314 4064572 ~ 4064850 (-) True G154146
TU175034 lncRNA upstream 11330 4068588 ~ 4068822 (-) True G154147
TU175035 lncRNA upstream 11995 4069253 ~ 4070441 (-) True G154148
TU175037 lncRNA upstream 13779 4071037 ~ 4071240 (-) False CI01000029_04071708_04075046
CI01000029_04017725_04032225.mRNA mRNA downstream 24512 4017193 ~ 4032225 (-) True CI01000029_04017725_04032225
CI01000029_03988871_03998768.mRNA mRNA downstream 57969 3988590 ~ 3998768 (-) True CI01000029_03988871_03998768
CI01000029_03949550_03958610.mRNA mRNA downstream 97993 3949306 ~ 3958744 (-) True CI01000029_03949550_03958610
CI01000029_03942459_03946094.mRNA mRNA downstream 110643 3942436 ~ 3946094 (-) True CI01000029_03942459_03946094
CI01000029_03927561_03936968.mRNA mRNA downstream 119769 3927499 ~ 3936968 (-) True CI01000029_03927561_03936968
CI01000029_04071708_04075046.mRNA mRNA upstream 13466 4070724 ~ 4075299 (-) False CI01000029_04071708_04075046
CI01000029_04108560_04110587.mRNA mRNA upstream 51140 4108398 ~ 4110871 (-) True CI01000029_04108560_04110587
CI01000029_04115189_04121331.mRNA mRNA upstream 57905 4115163 ~ 4121331 (-) True CI01000029_04115189_04121331
CI01000029_04122433_04123725.mRNA mRNA upstream 64950 4122208 ~ 4123725 (-) True CI01000029_04122433_04123725
CI01000029_04125071_04135324.mRNA mRNA upstream 67483 4124741 ~ 4135374 (-) True CI01000029_04125071_04135324
TU174823 other downstream 349485 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 770183 3248777 ~ 3286554 (-) True G153891
TU173923 other downstream 1463935 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 2762614 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU175091 other upstream 403085 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 928850 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 928927 4986185 ~ 4987425 (-) True G154415
TU177741 other upstream 3113109 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 3309069 7366327 ~ 7369547 (-) False G156495

Expression Profile