RNA id: TU175033


Basic Information

Item Value
RNA id TU175033
length 279
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G154146
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4064572 ~ 4064850 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAATTGAGTTTTTTAAAATTGCACAAAAAATAAATTCATGCAAGTCTCACCATGTCAAAGAGGGCCATGCCAAAGTTAATGGCTATAGCTGTGACAGTGAGAATGTTCCGCATACTGTTGTTTTCATGGATCCAGCAGCAGAACTGCTGAAGGATACCAGGAGAATGTTTGAACTCTTCAGCCAGGACCATCACAAGCAATAATAGATATCCCAGCAAGAACAGACAAAACTGTAATGCTGTCCAGTGATACAACCTGCAGATAAGACAATGAAGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175031 lncRNA downstream 2150 4062182 ~ 4062422 (-) True G154144
TU175027 lncRNA downstream 7314 4056737 ~ 4057258 (-) True G154140
TU175024 lncRNA downstream 62097 4002176 ~ 4002475 (-) True G154137
TU174941 lncRNA downstream 323853 3736231 ~ 3740719 (-) True G154057
TU174931 lncRNA downstream 376102 3688227 ~ 3688470 (-) True G154047
TU175034 lncRNA upstream 3738 4068588 ~ 4068822 (-) True G154147
TU175035 lncRNA upstream 4403 4069253 ~ 4070441 (-) True G154148
TU175037 lncRNA upstream 6187 4071037 ~ 4071240 (-) False CI01000029_04071708_04075046
TU175039 lncRNA upstream 6841 4071691 ~ 4071918 (-) True CI01000029_04071708_04075046
TU175040 lncRNA upstream 11038 4075888 ~ 4076115 (-) True G154152
CI01000029_04046704_04057783.mRNA mRNA downstream 6316 4046646 ~ 4058256 (-) True CI01000029_04046704_04057783
CI01000029_04017725_04032225.mRNA mRNA downstream 32347 4017193 ~ 4032225 (-) True CI01000029_04017725_04032225
CI01000029_03988871_03998768.mRNA mRNA downstream 65804 3988590 ~ 3998768 (-) True CI01000029_03988871_03998768
CI01000029_03949550_03958610.mRNA mRNA downstream 105828 3949306 ~ 3958744 (-) True CI01000029_03949550_03958610
CI01000029_03942459_03946094.mRNA mRNA downstream 118478 3942436 ~ 3946094 (-) True CI01000029_03942459_03946094
CI01000029_04071708_04075046.mRNA mRNA upstream 5874 4070724 ~ 4075299 (-) False CI01000029_04071708_04075046
CI01000029_04108560_04110587.mRNA mRNA upstream 43548 4108398 ~ 4110871 (-) True CI01000029_04108560_04110587
CI01000029_04115189_04121331.mRNA mRNA upstream 50313 4115163 ~ 4121331 (-) True CI01000029_04115189_04121331
CI01000029_04122433_04123725.mRNA mRNA upstream 57358 4122208 ~ 4123725 (-) True CI01000029_04122433_04123725
CI01000029_04125071_04135324.mRNA mRNA upstream 59891 4124741 ~ 4135374 (-) True CI01000029_04125071_04135324
TU174823 other downstream 357320 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 778018 3248777 ~ 3286554 (-) True G153891
TU173923 other downstream 1471770 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 2770449 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU175091 other upstream 395493 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 921258 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 921335 4986185 ~ 4987425 (-) True G154415
TU177741 other upstream 3105517 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 3301477 7366327 ~ 7369547 (-) False G156495

Expression Profile