RNA id: TU175035


Basic Information

Item Value
RNA id TU175035
length 767
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G154148
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4069253 ~ 4070441 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAATTGTAGTGATCATGAAACTTACAAAGAAGAGACAGTTTGTGCACAATTTGTATCTGTGGTACATATGAGGTATTTTATGCTGTCATGGCAGAAATAAGGAACAATTCTGTAAACCGCCTTTTTCACATAATTATCAGAACGTTTACATTGGCTGTAGCAAAGTAAAATATATACCTGCAAAGTCTCATTAGATTGTTTCATTATAAGAAGTCCCAAGTGAAATTCATGAAAATATAATTTCAATAATTCCATTATTCTACTTGTGTTCTATAGACAAGTCCATATGAGGATTTTATATTATATTTGAGGTATCCTTTTGAAGATGAAGGCAGTGTCTCAATTCAAGTTACAGTGAATCCAGGTTTGATGTTTCACATCATAATTTTAAGTGGCTAAAGTTGCTGTTTGGCAGAGTGAAACCTCCATTGGTACCTCTCTGTTTCTCTCTGTGAATAGCCTGTACAAGACCAAAGACCACAGCGGCCAGGGTGGTCCTCCCACTGCGTCCATTCTTTCCTCTGTCTGCAATACCGTTGCTTGCCATCTGACGCCTTTTGGTGCTGATGAAGTATGTTCGGACACGTCCCTTTCTCTCACTGACGCCCTTGATGTATATCTCACCACGTAACTCTAGCACGAAGCCCCAGTCTGCTAGAATATTACGTGTGGCCTCAGGGACCTGAATCCTTCCACTGACTCCAGTACTGTCCATCCGGCTTGCCAAATTCACTGTCATGCCCCAGATATCATACTGGGGTTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175034 lncRNA downstream 431 4068588 ~ 4068822 (-) True G154147
TU175033 lncRNA downstream 4403 4064572 ~ 4064850 (-) True G154146
TU175031 lncRNA downstream 6831 4062182 ~ 4062422 (-) True G154144
TU175027 lncRNA downstream 11995 4056737 ~ 4057258 (-) True G154140
TU175024 lncRNA downstream 66778 4002176 ~ 4002475 (-) True G154137
TU175037 lncRNA upstream 596 4071037 ~ 4071240 (-) False CI01000029_04071708_04075046
TU175039 lncRNA upstream 1250 4071691 ~ 4071918 (-) True CI01000029_04071708_04075046
TU175040 lncRNA upstream 5447 4075888 ~ 4076115 (-) True G154152
TU175042 lncRNA upstream 28529 4098970 ~ 4101128 (-) True G154154
TU175057 lncRNA upstream 165335 4235776 ~ 4236640 (-) True G154169
CI01000029_04046704_04057783.mRNA mRNA downstream 10997 4046646 ~ 4058256 (-) True CI01000029_04046704_04057783
CI01000029_04017725_04032225.mRNA mRNA downstream 37028 4017193 ~ 4032225 (-) True CI01000029_04017725_04032225
CI01000029_03988871_03998768.mRNA mRNA downstream 70485 3988590 ~ 3998768 (-) True CI01000029_03988871_03998768
CI01000029_03949550_03958610.mRNA mRNA downstream 110509 3949306 ~ 3958744 (-) True CI01000029_03949550_03958610
CI01000029_03942459_03946094.mRNA mRNA downstream 123159 3942436 ~ 3946094 (-) True CI01000029_03942459_03946094
CI01000029_04071708_04075046.mRNA mRNA upstream 283 4070724 ~ 4075299 (-) False CI01000029_04071708_04075046
CI01000029_04108560_04110587.mRNA mRNA upstream 37957 4108398 ~ 4110871 (-) True CI01000029_04108560_04110587
CI01000029_04115189_04121331.mRNA mRNA upstream 44722 4115163 ~ 4121331 (-) True CI01000029_04115189_04121331
CI01000029_04122433_04123725.mRNA mRNA upstream 51767 4122208 ~ 4123725 (-) True CI01000029_04122433_04123725
CI01000029_04125071_04135324.mRNA mRNA upstream 54300 4124741 ~ 4135374 (-) True CI01000029_04125071_04135324
TU174823 other downstream 362001 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 782699 3248777 ~ 3286554 (-) True G153891
TU173923 other downstream 1476451 2592459 ~ 2592802 (-) True G153138
TU173481 other downstream 2775130 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU175091 other upstream 389902 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 915667 4986108 ~ 4987425 (-) False G154415
TU175314 other upstream 915744 4986185 ~ 4987425 (-) True G154415
TU177741 other upstream 3099926 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 3295886 7366327 ~ 7369547 (-) False G156495

Expression Profile