RNA id: TU174421


Basic Information

Item Value
RNA id TU174421
length 442
lncRNA type intronic
GC content 0.36
exon number 1
gene id G153589
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4073193 ~ 4073634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCAAATTGTGCAGCTCTACAAACAAGCACAGCAAACCCTGACCTTTTTTATTTAAATGGCATTTTAAATCGCAATCACAATTTTTATCTTAAAAATCTCAATTTGACCCCCCAATCATGCAGCCCTACTCGTAAGTAAAAAATTGTATTTTCTCTCTCAAATTAAAGAATGTTTCTTAGAAATATATAGACAAGAGTGACAAAATACAGGTCTGATTTTACACATTCAATCACCTTAGAATTTAGTTTTTACTCCCATTGTTTTGATTGAAGGAACTTTTCAGTCTTTACTTTAGGACTAGACTAAGTGTTTAACGTTCAGGGTCTTTGTGTGTTGTTGCATCCCCTGTTATCATGCTGCTCATCACCATCACTGATGCCCCTGCCACATAGAAAGATAGCCTTGAAGGCTTTTCTGAAGGTTTTCATCCTGTAGGCGTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174400 lncRNA upstream 60195 4012687 ~ 4012998 (+) True G153568
TU174394 lncRNA upstream 70064 4002925 ~ 4003129 (+) True G153562
TU174393 lncRNA upstream 70632 4002324 ~ 4002561 (+) True G153561
TU174387 lncRNA upstream 78817 3992553 ~ 3994376 (+) True G153555
TU174314 lncRNA upstream 88693 3750312 ~ 3984500 (+) True G153492
TU174430 lncRNA downstream 44897 4118531 ~ 4118925 (+) True G153598
TU174432 lncRNA downstream 46251 4119885 ~ 4120221 (+) True G153600
TU174437 lncRNA downstream 51125 4124759 ~ 4135507 (+) True G153602
TU174441 lncRNA downstream 68270 4141904 ~ 4142121 (+) True G153605
TU174482 lncRNA downstream 185684 4259318 ~ 4259607 (+) True G153645
CI01000029_04060211_04069639.mRNA mRNA upstream 2733 4058738 ~ 4070460 (+) True CI01000029_04060211_04069639
CI01000029_04007545_04011744.mRNA mRNA upstream 61185 4007545 ~ 4012008 (+) True CI01000029_04007545_04011744
CI01000029_03976118_03980629.mRNA mRNA upstream 92393 3976118 ~ 3980800 (+) True CI01000029_03976118_03980629
CI01000029_03855238_03922931.mRNA mRNA upstream 150073 3855238 ~ 3923120 (+) True CI01000029_03855238_03922931
CI01000029_03830894_03838298.mRNA mRNA upstream 234868 3829607 ~ 3838325 (+) True CI01000029_03830894_03838298
CI01000029_04076167_04079831.mRNA mRNA downstream 2162 4075796 ~ 4079964 (+) True CI01000029_04076167_04079831
CI01000029_04099307_04107542.mRNA mRNA downstream 25673 4099307 ~ 4107547 (+) True CI01000029_04099307_04107542
CI01000029_04143243_04143794.mRNA mRNA downstream 69609 4143243 ~ 4144051 (+) True CI01000029_04143243_04143794
CI01000029_04213048_04215977.mRNA mRNA downstream 139414 4213048 ~ 4216310 (+) True CI01000029_04213048_04215977
CI01000029_04223968_04232159.mRNA mRNA downstream 149910 4223544 ~ 4232309 (+) True CI01000029_04223968_04232159
TU174291 other upstream 511189 3545125 ~ 3562004 (+) True G153475
TU173161 other upstream 1310254 2761594 ~ 2762939 (+) True G152451
TU172657 other upstream 2545294 1526786 ~ 1527899 (+) True CI01000029_01526863_01527414
TU172072 other upstream 3701469 366580 ~ 371724 (+) False G151495
TU174646 other downstream 659955 4733589 ~ 4740107 (+) True G153790
TU175511 other downstream 1197386 5271020 ~ 5271535 (+) True G154587
TU175455 other downstream 1383607 5457241 ~ 5457472 (+) True G154531
TU176089 other downstream 2209051 6282685 ~ 6288398 (+) True G155079
TU176095 other downstream 2357901 6431535 ~ 6490294 (+) False G155083

Expression Profile