RNA id: TU174482


Basic Information

Item Value
RNA id TU174482
length 290
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G153645
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4259318 ~ 4259607 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAAACGTTACAGCTAATGGAAAAATCATTAGTTTGACTCTGAGTGTAACTTCAGGACACTGCTGCATTGCACTCCGCCTTTGAACTTGCAAGCAATGTGACATATGTAAAAGTTAAAAGCTAGCATAATTCAACCTCCCAGGAAGTACAGCATTTGAGCAAACCATACCTTTTCACACAAAGCCAATTTGTCTACTAGAATTTTTTGTGACAAGCTAAATCCAGACAGTGATACTGACATAAATCCTGCTAGGGGAAATAAAATGGACAAAGATGTGCTTTGTGCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174441 lncRNA upstream 117197 4141904 ~ 4142121 (+) True G153605
TU174437 lncRNA upstream 123811 4124759 ~ 4135507 (+) True G153602
TU174432 lncRNA upstream 139097 4119885 ~ 4120221 (+) True G153600
TU174430 lncRNA upstream 140393 4118531 ~ 4118925 (+) True G153598
TU174421 lncRNA upstream 185684 4073193 ~ 4073634 (+) True G153589
TU174483 lncRNA downstream 303 4259910 ~ 4260205 (+) True G153646
TU174484 lncRNA downstream 694 4260301 ~ 4260539 (+) True G153647
TU174486 lncRNA downstream 5340 4264947 ~ 4265213 (+) True G153649
TU174488 lncRNA downstream 8140 4267747 ~ 4268078 (+) True G153651
TU174491 lncRNA downstream 10610 4270217 ~ 4270439 (+) True G153654
CI01000029_04253844_04257502.mRNA mRNA upstream 1640 4253726 ~ 4257678 (+) True CI01000029_04253844_04257502
CI01000029_04223968_04232159.mRNA mRNA upstream 27009 4223544 ~ 4232309 (+) True CI01000029_04223968_04232159
CI01000029_04213048_04215977.mRNA mRNA upstream 43008 4213048 ~ 4216310 (+) True CI01000029_04213048_04215977
CI01000029_04143243_04143794.mRNA mRNA upstream 115267 4143243 ~ 4144051 (+) True CI01000029_04143243_04143794
CI01000029_04099307_04107542.mRNA mRNA upstream 151771 4099307 ~ 4107547 (+) True CI01000029_04099307_04107542
CI01000029_04389599_04399047.mRNA mRNA downstream 129992 4389599 ~ 4399065 (+) True CI01000029_04389599_04399047
CI01000029_04409794_04419021.mRNA mRNA downstream 150187 4409794 ~ 4419021 (+) True CI01000029_04409794_04419021
CI01000029_04478628_04483582.mRNA mRNA downstream 216813 4476420 ~ 4483601 (+) False CI01000029_04478628_04483582
CI01000029_04521600_04521771.mRNA mRNA downstream 261993 4521600 ~ 4522751 (+) True CI01000029_04521600_04521771
CI01000029_04590418_04605290.mRNA mRNA downstream 330677 4590284 ~ 4605694 (+) True CI01000029_04590418_04605290
TU174291 other upstream 697314 3545125 ~ 3562004 (+) True G153475
TU173161 other upstream 1496379 2761594 ~ 2762939 (+) True G152451
TU172657 other upstream 2731419 1526786 ~ 1527899 (+) True CI01000029_01526863_01527414
TU172072 other upstream 3887594 366580 ~ 371724 (+) False G151495
TU174646 other downstream 473982 4733589 ~ 4740107 (+) True G153790
TU175511 other downstream 1011413 5271020 ~ 5271535 (+) True G154587
TU175455 other downstream 1197634 5457241 ~ 5457472 (+) True G154531
TU176089 other downstream 2023078 6282685 ~ 6288398 (+) True G155079
TU176095 other downstream 2171928 6431535 ~ 6490294 (+) False G155083

Expression Profile