Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU177641 |
| length | 649 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 1 |
| gene id | G156459 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 7021086 ~ 7021734 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU177592 | lncRNA | downstream | 118870 | 6893214 ~ 6902216 (-) | True | G156416 |
| TU177586 | lncRNA | downstream | 134387 | 6882587 ~ 6886699 (-) | True | G156410 |
| TU177577 | lncRNA | downstream | 159329 | 6861431 ~ 6861757 (-) | True | G156401 |
| TU177576 | lncRNA | downstream | 159842 | 6860954 ~ 6861244 (-) | True | G156400 |
| TU177569 | lncRNA | downstream | 168762 | 6852124 ~ 6852324 (-) | True | G156396 |
| TU177645 | lncRNA | upstream | 6824 | 7028558 ~ 7028779 (-) | True | G156463 |
| TU177651 | lncRNA | upstream | 15447 | 7037181 ~ 7037486 (-) | True | G156469 |
| TU177655 | lncRNA | upstream | 32695 | 7054429 ~ 7054771 (-) | True | G156473 |
| TU177662 | lncRNA | upstream | 44034 | 7065768 ~ 7066104 (-) | False | G156477 |
| TU177659 | lncRNA | upstream | 44108 | 7065842 ~ 7066104 (-) | True | G156477 |
| CI01000029_06921800_06922750.mRNA | mRNA | downstream | 97971 | 6921281 ~ 6923115 (-) | True | CI01000029_06921800_06922750 |
| CI01000029_06832914_06833074.mRNA | mRNA | downstream | 188012 | 6832709 ~ 6833074 (-) | False | CI01000029_06832914_06833074 |
| CI01000029_06798103_06806327.mRNA | mRNA | downstream | 214240 | 6798040 ~ 6806846 (-) | True | CI01000029_06798103_06806327 |
| CI01000029_06739098_06769987.mRNA | mRNA | downstream | 251099 | 6738714 ~ 6769987 (-) | False | CI01000029_06739098_06769987 |
| CI01000029_06719634_06722376.mRNA | mRNA | downstream | 297914 | 6719527 ~ 6723172 (-) | True | CI01000029_06719634_06722376 |
| CI01000029_07332828_07336542.mRNA | mRNA | upstream | 310561 | 7332295 ~ 7336542 (-) | True | CI01000029_07332828_07336542 |
| CI01000029_07346183_07362585.mRNA | mRNA | upstream | 324331 | 7346065 ~ 7362585 (-) | True | CI01000029_07346183_07362585 |
| CI01000029_07388885_07402311.mRNA | mRNA | upstream | 366510 | 7388244 ~ 7402678 (-) | True | CI01000029_07388885_07402311 |
| CI01000029_07405933_07416452.mRNA | mRNA | upstream | 383809 | 7405543 ~ 7416952 (-) | True | CI01000029_07405933_07416452 |
| CI01000029_07419676_07421496.mRNA | mRNA | upstream | 397901 | 7419635 ~ 7422668 (-) | True | CI01000029_07419676_07421496 |
| TU175317 | other | downstream | 2033661 | 4986108 ~ 4987425 (-) | False | G154415 |
| TU175314 | other | downstream | 2033661 | 4986185 ~ 4987425 (-) | True | G154415 |
| TU175091 | other | downstream | 2543874 | 4472400 ~ 4477212 (-) | True | G154201 |
| TU174823 | other | downstream | 3313834 | 3706223 ~ 3707252 (-) | True | CI01000029_03698769_03707177 |
| TU174756 | other | downstream | 3734532 | 3248777 ~ 3286554 (-) | True | G153891 |
| TU177741 | other | upstream | 148633 | 7170367 ~ 7170951 (-) | False | G156542 |
| TU177684 | other | upstream | 344593 | 7366327 ~ 7369547 (-) | False | G156495 |
| TU177685 | other | upstream | 344593 | 7366327 ~ 7369547 (-) | False | G156495 |
