RNA id: TU177740


Basic Information

Item Value
RNA id TU177740
length 301
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G156542
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7170367 ~ 7170951 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCCATCCATGTGGATGTTACTTTGACACGTACCACCTACCTAAGCATTGTTGCAGACCATGTACACCCTTTCATGGAAACGGTATTCCCTGGTGGCTGTGGCCTCTTTCAGCAGGATAATGCTCCTGCCACAAAGCAAAAATGGTTCAGGAATGGTTTGAGGAGCACAACAATGAGTTTGAGGTGTTGACTTGGCCTCCAAATTCCCCAGATCTCAATCCAATCGAGCATCTGTGGGATGTGCTGAACAAACAAGTCCGATCCATGGAGGCTCCACCTCGCAACTTACAGGACTTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177723 lncRNA downstream 1071 7167529 ~ 7169580 (-) True G156525
TU177679 lncRNA downstream 57978 7112253 ~ 7112673 (-) True G156492
TU177662 lncRNA downstream 104547 7065768 ~ 7066104 (-) False G156477
TU177659 lncRNA downstream 104547 7065842 ~ 7066104 (-) True G156477
TU177655 lncRNA downstream 115880 7054429 ~ 7054771 (-) True G156473
TU177744 lncRNA upstream 13641 7184592 ~ 7184817 (-) True G156545
TU177746 lncRNA upstream 18723 7189674 ~ 7189989 (-) True G156547
TU177714 lncRNA upstream 37599 7208550 ~ 7208864 (-) True G156516
TU177775 lncRNA upstream 89769 7260720 ~ 7263281 (-) True G156574
TU177785 lncRNA upstream 116582 7287533 ~ 7291974 (-) True G156584
CI01000029_06921800_06922750.mRNA mRNA downstream 247536 6921281 ~ 6923115 (-) True CI01000029_06921800_06922750
CI01000029_06832914_06833074.mRNA mRNA downstream 337577 6832709 ~ 6833074 (-) False CI01000029_06832914_06833074
CI01000029_06798103_06806327.mRNA mRNA downstream 363805 6798040 ~ 6806846 (-) True CI01000029_06798103_06806327
CI01000029_06739098_06769987.mRNA mRNA downstream 400664 6738714 ~ 6769987 (-) False CI01000029_06739098_06769987
CI01000029_06719634_06722376.mRNA mRNA downstream 447479 6719527 ~ 6723172 (-) True CI01000029_06719634_06722376
CI01000029_07332828_07336542.mRNA mRNA upstream 161344 7332295 ~ 7336542 (-) True CI01000029_07332828_07336542
CI01000029_07346183_07362585.mRNA mRNA upstream 175114 7346065 ~ 7362585 (-) True CI01000029_07346183_07362585
CI01000029_07388885_07402311.mRNA mRNA upstream 217293 7388244 ~ 7402678 (-) True CI01000029_07388885_07402311
CI01000029_07405933_07416452.mRNA mRNA upstream 234592 7405543 ~ 7416952 (-) True CI01000029_07405933_07416452
CI01000029_07419676_07421496.mRNA mRNA upstream 248684 7419635 ~ 7422668 (-) True CI01000029_07419676_07421496
TU175317 other downstream 2183226 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 2183226 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 2693439 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 3463399 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 3884097 3248777 ~ 3286554 (-) True G153891
TU177684 other upstream 195376 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 195376 7366327 ~ 7369547 (-) False G156495

Expression Profile