RNA id: TU177785


Basic Information

Item Value
RNA id TU177785
length 1499
lncRNA type antisense_over
GC content 0.39
exon number 5
gene id G156584
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7287533 ~ 7291974 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTTAGTTTTACATAAAATAAATAAAATAAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAATAAAATAAAATACATTAAATGGACTAGCATCTGAGTCTACTTTTTGTAGTTTTTCTATTCAATTTCGATCCAGTTAAAGTGGATAATAATAAAATATATTACTATTTATTTTTTGATTAATTTCTATTTATTATTATTTTATTATTCTATGACTTTTCTAAAAAACAACATAAAAATAATAAAATAAAATAAAATAAAATATAAAATGACATCCAAGTCTACTTTTTAGAGTTTTTCTATTTGATTTCGATCCAGTTAAAGTGTTTATTTCATTTATCGAGGACTTAAGCGTGAAAACACCCTGAATCTGCATCACTTGCACAATCTTTACGCAGATGTCACCTGTTTCTTCAAAGACTCACCCTGGTTTCATGAAGACACGTCCAAAGTGTATCTGAGCATGAAGATCGATATCAAGTACCTGTTTCAGGTAATCCTGTGAAAACATCCATTTAAAATCATCTTAATGATGCCGTAAACTCGCAAACTGTGCAGTGTGACAAAGTTTTCTGATTGTAGAAAAACAGTATTATCTCATCTCATGTGTGTACATCATTTTAAACAGATCTGTAATTATGTAAAGTACAAGGCACCTCATTTCTTTAGGTGTAAAACTCTTTGATGTGAAAATCTCAGTGAGAAACATCTCATCTGAAGGGGTCAGCGGGTCTTACTACCATCCAGCCACTAGATGTCAGTATAAAGCAGTGATTACTAAATCAAACTCAAAGTCTGCACATCATCTTCGGACGTGTTATGCTTTTCCATGCAGTTTTTCCTTTTACAGGGACATTACTGCATTTGGAACATCATCAAACCAAATATTATAAAAACACCATTTAGCTGTTGATTTTGTCTTTACAAAGCTGCCAACAAAAAATAGATCAAATATAAAAGGTCTTGTACCTTTTCCCCCATAGACACGCCCCCTGAGGTGATGATGACGTCGGCACGGCTGATTCCCTCATTCAGAGCATTCAACAGGTCATCAGGGTTGTCTCCCACGATGCCCAGGTTGATGGTCGGGTATCCGTGCTCCTGAATGGTGGCCAGCAGCGTAGAGCGATTCGAGTCTCTGATCTTACCGGGATGTAAATCATCCTCTGGGTTCAGCAGCTCGTTTCCTGTAGACATCACAGCCACGACGGGAAACTTCTGCACTTCCACCTCCGTGACGCCCACTGTGGCCAGCAGACCGATTTCAGACGGGCCCATGTGAGTGCCTTTGGCCAACACGCATTCGCCTCGCTTAATGTCATGACCGATGGGCCTGATGTCTTGACCTGGACGCGCTTGAACCAGAATCCTCACCTCCAGCTCTTCTGTGCCGTCTTCAGACTCTCTCAGGAGTTCAGTATCTTCTACTTGAACCACAGCATCTGCTCCGCATGGAATAGGAGCGCCTGTCGTCACCCGCATCACCTGACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177775 lncRNA downstream 24252 7260720 ~ 7263281 (-) True G156574
TU177714 lncRNA downstream 78669 7208550 ~ 7208864 (-) True G156516
TU177746 lncRNA downstream 97544 7189674 ~ 7189989 (-) True G156547
TU177744 lncRNA downstream 102716 7184592 ~ 7184817 (-) True G156545
TU177740 lncRNA downstream 116582 7170651 ~ 7170951 (-) True G156542
TU177791 lncRNA upstream 17824 7309798 ~ 7310020 (-) True G156587
TU177792 lncRNA upstream 24092 7316066 ~ 7317545 (-) True G156588
TU177798 lncRNA upstream 38271 7330245 ~ 7330606 (-) True G156594
TU177691 lncRNA upstream 73033 7365007 ~ 7369547 (-) False G156495
TU177687 lncRNA upstream 74353 7366327 ~ 7369547 (-) False G156495
CI01000029_06921800_06922750.mRNA mRNA downstream 364418 6921281 ~ 6923115 (-) True CI01000029_06921800_06922750
CI01000029_06832914_06833074.mRNA mRNA downstream 454459 6832709 ~ 6833074 (-) False CI01000029_06832914_06833074
CI01000029_06798103_06806327.mRNA mRNA downstream 480687 6798040 ~ 6806846 (-) True CI01000029_06798103_06806327
CI01000029_06739098_06769987.mRNA mRNA downstream 517546 6738714 ~ 6769987 (-) False CI01000029_06739098_06769987
CI01000029_06719634_06722376.mRNA mRNA downstream 564361 6719527 ~ 6723172 (-) True CI01000029_06719634_06722376
CI01000029_07332828_07336542.mRNA mRNA upstream 40321 7332295 ~ 7336542 (-) True CI01000029_07332828_07336542
CI01000029_07346183_07362585.mRNA mRNA upstream 54091 7346065 ~ 7362585 (-) True CI01000029_07346183_07362585
CI01000029_07388885_07402311.mRNA mRNA upstream 96270 7388244 ~ 7402678 (-) True CI01000029_07388885_07402311
CI01000029_07405933_07416452.mRNA mRNA upstream 113569 7405543 ~ 7416952 (-) True CI01000029_07405933_07416452
CI01000029_07419676_07421496.mRNA mRNA upstream 127661 7419635 ~ 7422668 (-) True CI01000029_07419676_07421496
TU177741 other downstream 116582 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 2300108 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 2300108 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 2810321 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 3580281 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU177684 other upstream 74353 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 74353 7366327 ~ 7369547 (-) False G156495

Expression Profile