RNA id: TU176539


Basic Information

Item Value
RNA id TU176539
length 217
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G155470
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7481916 ~ 7482132 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCGAGGAAAACTGTGGGATGTGAAAACAAAAGGAAACACGGTTAAATCAGAGTGTATTCCCCAGGGTTGGGACAGAAACTGATGAAGCACGAGTGTCAGAGGATGACCGTTGTCCACGTGCTTACGTAACAGGCTAATTACGTATCGCATGAAGCCACACTACGACAGCAACGACTGTCATCTGAGAGCATCAGTGTTGGCAATGCAGTGTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176538 lncRNA upstream 5927 7475740 ~ 7475989 (+) True G155469
TU176537 lncRNA upstream 7562 7474084 ~ 7474354 (+) True G155468
TU176535 lncRNA upstream 8363 7473345 ~ 7473553 (+) True G155466
TU176376 lncRNA upstream 13403 7465581 ~ 7468513 (+) True G155335
TU176532 lncRNA upstream 27560 7453772 ~ 7454356 (+) True G155463
TU176540 lncRNA downstream 1806 7483938 ~ 7484274 (+) True G155471
TU176546 lncRNA downstream 8403 7490535 ~ 7491154 (+) True G155477
TU176551 lncRNA downstream 9527 7491659 ~ 7492014 (+) True G155478
TU176553 lncRNA downstream 13758 7495890 ~ 7496296 (+) True G155480
TU176556 lncRNA downstream 16374 7498506 ~ 7498799 (+) True G155483
CI01000029_07426889_07428262.mRNA mRNA upstream 53473 7424439 ~ 7428443 (+) True CI01000029_07426889_07428262
CI01000029_07365981_07371241.mRNA mRNA upstream 110315 7365981 ~ 7371601 (+) True CI01000029_07365981_07371241
CI01000029_07338994_07342252.mRNA mRNA upstream 139174 7338994 ~ 7342742 (+) True CI01000029_07338994_07342252
CI01000029_07304652_07330373.mRNA mRNA upstream 151460 7304652 ~ 7330456 (+) True CI01000029_07304652_07330373
CI01000029_07252129_07298828.mRNA mRNA upstream 182070 7252129 ~ 7299846 (+) True CI01000029_07252129_07298828
CI01000029_07500425_07501888.mRNA mRNA downstream 18193 7500325 ~ 7502032 (+) True CI01000029_07500425_07501888
CI01000029_07503905_07506541.mRNA mRNA downstream 21773 7503905 ~ 7506835 (+) True CI01000029_07503905_07506541
CI01000029_07514095_07516740.mRNA mRNA downstream 31874 7514006 ~ 7516742 (+) True CI01000029_07514095_07516740
CI01000029_07540982_07543852.mRNA mRNA downstream 56810 7538942 ~ 7543895 (+) True CI01000029_07540982_07543852
CI01000029_07602986_07608307.mRNA mRNA downstream 120537 7602669 ~ 7608326 (+) True CI01000029_07602986_07608307
TU176307 other upstream 574484 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 991622 6431535 ~ 6490294 (+) False G155083
TU176099 other upstream 991622 6431535 ~ 6490294 (+) True G155083
TU176089 other upstream 1193518 6282685 ~ 6288398 (+) True G155079
TU175455 other upstream 2011570 5457241 ~ 5457472 (+) True G154531
TU176602 other downstream 152701 7634833 ~ 7637834 (+) True G155522
TU176707 other downstream 449348 7931480 ~ 7932177 (+) True G155627
TU177125 other downstream 1482686 8964818 ~ 9064541 (+) False G156007

Expression Profile