Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU176748 |
| length | 3795 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 1 |
| gene id | G155667 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 8060059 ~ 8063853 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU176743 | lncRNA | upstream | 13043 | 7969504 ~ 8047016 (+) | True | G155662 |
| TU176764 | lncRNA | upstream | 93533 | 7966287 ~ 7966526 (+) | True | G155683 |
| TU176763 | lncRNA | upstream | 96165 | 7963682 ~ 7963894 (+) | True | G155682 |
| TU176712 | lncRNA | upstream | 98899 | 7951604 ~ 7961160 (+) | True | G155632 |
| TU176729 | lncRNA | upstream | 116273 | 7942756 ~ 7943786 (+) | True | G155649 |
| TU176755 | lncRNA | downstream | 1847 | 8065700 ~ 8066608 (+) | True | G155674 |
| TU176746 | lncRNA | downstream | 20333 | 8084186 ~ 8092254 (+) | True | G155665 |
| TU176770 | lncRNA | downstream | 31970 | 8095823 ~ 8096101 (+) | True | G155689 |
| TU176772 | lncRNA | downstream | 34485 | 8098338 ~ 8098596 (+) | True | G155691 |
| TU176753 | lncRNA | downstream | 60923 | 8124776 ~ 8127965 (+) | True | G155672 |
| CI01000029_08053844_08058278.mRNA | mRNA | upstream | 1538 | 8053844 ~ 8058521 (+) | True | CI01000029_08053844_08058278 |
| CI01000029_08019292_08036434.mRNA | mRNA | upstream | 23301 | 8019292 ~ 8036758 (+) | True | CI01000029_08019292_08036434 |
| CI01000029_08007965_08016092.mRNA | mRNA | upstream | 43910 | 8007055 ~ 8016149 (+) | True | CI01000029_08007965_08016092 |
| CI01000029_07997857_08002279.mRNA | mRNA | upstream | 56962 | 7997696 ~ 8003097 (+) | True | CI01000029_07997857_08002279 |
| CI01000029_07933165_07944093.mRNA | mRNA | upstream | 115966 | 7933165 ~ 7944093 (+) | False | CI01000029_07933165_07944093 |
| CI01000029_08072926_08079001.mRNA | mRNA | downstream | 9073 | 8072926 ~ 8079112 (+) | True | CI01000029_08072926_08079001 |
| CI01000029_08140259_08140582.mRNA | mRNA | downstream | 76322 | 8140175 ~ 8140945 (+) | True | CI01000029_08140259_08140582 |
| CI01000029_08156225_08174249.mRNA | mRNA | downstream | 92061 | 8155914 ~ 8175136 (+) | True | CI01000029_08156225_08174249 |
| CI01000029_08198433_08203489.mRNA | mRNA | downstream | 134512 | 8198365 ~ 8203538 (+) | True | CI01000029_08198433_08203489 |
| CI01000029_08288440_08301175.mRNA | mRNA | downstream | 224587 | 8288440 ~ 8301357 (+) | True | CI01000029_08288440_08301175 |
| TU176707 | other | upstream | 127882 | 7931480 ~ 7932177 (+) | True | G155627 |
| TU176602 | other | upstream | 422225 | 7634833 ~ 7637834 (+) | True | G155522 |
| TU176307 | other | upstream | 1152627 | 6906188 ~ 6907432 (+) | False | CI01000029_06906861_06907157 |
| TU176095 | other | upstream | 1569765 | 6431535 ~ 6490294 (+) | False | G155083 |
| TU177125 | other | downstream | 900965 | 8964818 ~ 9064541 (+) | False | G156007 |
