RNA id: TU176848


Basic Information

Item Value
RNA id TU176848
length 200
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G155758
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8381585 ~ 8381784 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGGTTGCGCATTCTGACTCAGGTGCTAGACTCAAACTCCTGGTGTGTAAGCCACAAATTTCATTTATGAAGGGAATGTGTCCAGATAAACTCAAAACACTTGCAGTCTGTATAACTCATAAATGCATCTTCATTCTTGAGTCTCTCCAACAGTGTTTAGCTTTAGCCATGTTAGCAAACATTCACAAAATGCATGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176847 lncRNA upstream 3295 8378071 ~ 8378290 (+) True G155757
TU176843 lncRNA upstream 7256 8374034 ~ 8374329 (+) True G155753
TU176807 lncRNA upstream 132872 8248489 ~ 8248713 (+) True G155720
TU176813 lncRNA upstream 136095 8244999 ~ 8245490 (+) True G155725
TU176811 lncRNA upstream 138780 8242311 ~ 8242805 (+) True G155723
TU176859 lncRNA downstream 1084 8382868 ~ 8384341 (+) True G155769
TU176904 lncRNA downstream 60356 8442140 ~ 8442351 (+) True G155809
TU176952 lncRNA downstream 184523 8566307 ~ 8567447 (+) False G155845
TU176953 lncRNA downstream 184578 8566362 ~ 8567447 (+) True G155845
TU176956 lncRNA downstream 185831 8567615 ~ 8567913 (+) True G155848
CI01000029_08367350_08368348.mRNA mRNA upstream 13071 8366344 ~ 8368514 (+) True CI01000029_08367350_08368348
CI01000029_08346604_08357224.mRNA mRNA upstream 23952 8346401 ~ 8357633 (+) True CI01000029_08346604_08357224
CI01000029_08318488_08338631.mRNA mRNA upstream 42226 8318488 ~ 8339359 (+) True CI01000029_08318488_08338631
CI01000029_08288440_08301175.mRNA mRNA upstream 80228 8288440 ~ 8301357 (+) True CI01000029_08288440_08301175
CI01000029_08198433_08203489.mRNA mRNA upstream 178047 8198365 ~ 8203538 (+) True CI01000029_08198433_08203489
CI01000029_08425310_08441838.mRNA mRNA downstream 42013 8423797 ~ 8441847 (+) True CI01000029_08425310_08441838
CI01000029_08443106_08447917.mRNA mRNA downstream 61174 8442958 ~ 8447917 (+) True CI01000029_08443106_08447917
CI01000029_08484998_08502958.mRNA mRNA downstream 103168 8484952 ~ 8503169 (+) True CI01000029_08484998_08502958
CI01000029_08506379_08516187.mRNA mRNA downstream 124595 8506379 ~ 8516305 (+) True CI01000029_08506379_08516187
CI01000029_08533907_08555317.mRNA mRNA downstream 152123 8533907 ~ 8555969 (+) True CI01000029_08533907_08555317
TU176707 other upstream 449408 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 743751 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 1474153 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 1891291 6431535 ~ 6490294 (+) False G155083
TU177125 other downstream 583034 8964818 ~ 9064541 (+) False G156007

Expression Profile